2017-02-17 |
gmungoc | JAL-2403 constants for "NJ", "AV" |
tree | commitdiff |
2017-02-14 |
gmungoc | Parsing moved to (new) ScoreMatrixFile, drag and drop... |
tree | commitdiff |
2017-02-13 |
gmungoc | JAL-2416 allow alphabet symbol (optional) in first... |
tree | commitdiff |
2017-02-13 |
gmungoc | JAL-1632 JAL-2416 load score matrices from file, as... |
tree | commitdiff |
2017-02-13 |
gmungoc | JAL-1632 first cut of Tree chooser dialog and ScoreMode... |
tree | commitdiff |
2017-02-09 |
gmungoc | Merge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory |
tree | commitdiff |
2017-02-07 |
gmungoc | JAL-2379 removed unused commented code |
tree | commitdiff |
2017-02-06 |
gmungoc | JAL-2379 computePairwiseScores() moved to ScoreMatrix |
tree | commitdiff |
2017-02-03 |
gmungoc | JAL-2379 'direct' pairwise score calculation for PCA... |
tree | commitdiff |
2017-01-26 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
tree | commitdiff |
2017-01-26 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
tree | commitdiff |
2017-01-26 |
gmungoc | Merge branch 'develop' into features/JAL-2379pcaMemory |
tree | commitdiff |
2017-01-26 |
gmungoc | JAL-2380 code tidy after review |
tree | commitdiff |
2017-01-17 |
gmungoc | JAL-2379 use SparseMatrix for encoded sequences, tidy... |
tree | commitdiff |
2017-01-04 |
gmungoc | JAL-2371 CollectionColourScheme wraps ColourSchemeI |
tree | commitdiff |
2016-12-16 |
gmungoc | JAL-1705 JAL-98 use SortedMap as more accurate type... |
tree | commitdiff |
2016-12-05 |
gmungoc | Merge branch 'features/JAL-1933_occupancy' into feature... |
tree | commitdiff |
2016-12-04 |
Jim Procter | JAL-1933 show occupancy count as a tooltip |
tree | commitdiff |
2016-12-04 |
Jim Procter | JAL-1933 switch from gap count to occupancy |
tree | commitdiff |
2016-12-02 |
gmungoc | Merge branch 'features/JAL-1933_occupancy' into feature... |
tree | commitdiff |
2016-12-02 |
gmungoc | JAL-1933 gap value as description; minor formatting |
tree | commitdiff |
2016-12-01 |
Jim Procter | JAL-1933 update the bounds for the Gap annotation row... |
tree | commitdiff |
2016-12-01 |
Jim Procter | JAL-1933 basic hack to get gap counts shown as an annot... |
tree | commitdiff |
2016-11-23 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimera... |
tree | commitdiff |
2016-11-22 |
Jim Procter | Merge branch 'features/JAL-1738_JAL-345_selectionfromhi... |
tree | commitdiff |
2016-11-17 |
gmungoc | JAL-98 ProfilesI container for profiles for columns |
tree | commitdiff |
2016-11-11 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimera... |
tree | commitdiff |
2016-11-08 |
gmungoc | JAL-2295 make RangeComparator a top level class for... |
tree | commitdiff |
2016-11-08 |
tcofoegbu | JAL-2292 updated method calls |
tree | commitdiff |
2016-11-04 |
tcofoegbu | JAL-2292 fix for wrong mapping output in sequence mappi... |
tree | commitdiff |
2016-11-03 |
gmungoc | JAL-2310 don't double-count sequence matches; code... |
tree | commitdiff |
2016-11-02 |
Jim Procter | JAL-1738 JAL-345 fix for JAL-2302 only report Matches... |
tree | commitdiff |
2016-11-02 |
gmungoc | JAL-98 JAL-1854 encapsulate 'magic number' threshold... |
tree | commitdiff |
2016-11-02 |
gmungoc | JAL-98 ProfileI interface for Profile |
tree | commitdiff |
2016-11-02 |
gmungoc | JAL-98 Profile and ResidueCount moved from analysis... |
tree | commitdiff |
2016-11-02 |
gmungoc | JAL-98 wording "negatively conserved" now "absence... |
tree | commitdiff |
2016-11-01 |
gmungoc | Conservation now using ResidueCount; tests added |
tree | commitdiff |
2016-11-01 |
gmungoc | JAL-98 typo in javadoc |
tree | commitdiff |
2016-10-28 |
Jim Procter | JAL-966 JAL-1738 JAL-345 interfaces for SearchResults... |
tree | commitdiff |
2016-10-25 |
gmungoc | JAL-98 javadoc corrected |
tree | commitdiff |
2016-10-25 |
gmungoc | JAL-98 javadoc added |
tree | commitdiff |
2016-10-25 |
gmungoc | JAL-98 minor fixes to / tests for annotation derivation |
tree | commitdiff |
2016-10-25 |
Jim Procter | JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch |
tree | commitdiff |
2016-10-25 |
gmungoc | JAL-98 small efficiency fix + commenting |
tree | commitdiff |
2016-10-25 |
gmungoc | JAL-98 javadoc / comments updated |
tree | commitdiff |
2016-10-24 |
gmungoc | JAL-98 fixme comment removed - nothing to do |
tree | commitdiff |
2016-10-24 |
gmungoc | JAL-98 ResidueCount 100% test coverage (and bug fixes!) |
tree | commitdiff |
2016-10-06 |
gmungoc | Merge branch 'develop' into bug/JAL-98consensusMemory |
tree | commitdiff |
2016-10-06 |
Jim Procter | JAL-2089 Merge branch releases/Release_2_10_Branch... |
tree | commitdiff |
2016-10-05 |
Jim Procter | JAL-2189 source formatting |
tree | commitdiff |
2016-10-03 |
gmungoc | JAL-98 use Profile to store consensus, ResidueCount... |
tree | commitdiff |
2016-10-03 |
Jim Procter | JAL-2210 hack to remove EMBL from Protein crossrefs... |
tree | commitdiff |
2016-10-03 |
Jim Procter | JAL-2210 explicit ‘doNotAdd’ list to prevent sequences... |
tree | commitdiff |
2016-10-02 |
Jim Procter | JAL-2210 two pass attempt to import retrieved sequences... |
tree | commitdiff |
2016-10-02 |
Jim Procter | JAL-2210 try to merge all sequences referenced by a... |
tree | commitdiff |
2016-10-02 |
Jim Procter | JAL-2210 comments |
tree | commitdiff |
2016-10-02 |
Jim Procter | JAL-2210 discover candidate dataset sequences for an... |
tree | commitdiff |
2016-10-01 |
Jim Procter | JAL-2210 factored out code for processing cross-referen... |
tree | commitdiff |
2016-10-01 |
Jim Procter | JAL-2210 refactor code to remove from a list of dbrefs... |
tree | commitdiff |
2016-09-30 |
Jim Procter | JAL-2210 some DBRef xref/ref correspondences may add... |
tree | commitdiff |
2016-09-30 |
Jim Procter | JAL-2210 CrossRef.findInDataset should search for prese... |
tree | commitdiff |
2016-09-30 |
gmungoc | Merge branch 'develop' into bug/JAL-98consensusMemory |
tree | commitdiff |
2016-09-27 |
gmungoc | JAL-2230 use correct mapping to transfer features to... |
tree | commitdiff |
2016-09-26 |
gmungoc | JAL-98 bug fix, string optimisation, sorted AA properties |
tree | commitdiff |
2016-09-26 |
gmungoc | JAL-98 don't include gaps in maxResidue! |
tree | commitdiff |
2016-09-23 |
gmungoc | JAL-98 performance tweaks to use of SparseIntArray |
tree | commitdiff |
2016-09-23 |
Jim Procter | JAL-2214 fix docs (consistent and correct base pair... |
tree | commitdiff |
2016-09-23 |
gmungoc | JAL-98 first working version |
tree | commitdiff |
2016-09-23 |
gmungoc | JAL-2214 Javadoc |
tree | commitdiff |
2016-09-23 |
gmungoc | JAL-98 use SparseIntArray (wip) |
tree | commitdiff |
2016-09-22 |
gmungoc | JAL-1421 use declared type of ResidueProperties.propHash |
tree | commitdiff |
2016-09-22 |
gmungoc | JAL-1421 typed ResidueProperties.propHash; JAL-2176... |
tree | commitdiff |
2016-09-21 |
Jim Procter | JAL-2214 JAL-1841 compute canonical, canonicalAndWobble... |
tree | commitdiff |
2016-09-21 |
Jim Procter | JAL-1841 JAL-2215 add the ‘ignore gaps’ structure conse... |
tree | commitdiff |
2016-09-21 |
Jim Procter | JAL-2214 test for strict Watson-Crick pairing |
tree | commitdiff |
2016-09-20 |
gmungoc | JAL-1306 calculate Quality also when Conservation not... |
tree | commitdiff |
2016-09-07 |
Jim Procter | Merge branch 'develop' into bug/JAL-1803_JAL-2157 |
tree | commitdiff |
2016-09-01 |
gmungoc | JAL-1421 add generics to NJTree, refactor recursive... |
tree | commitdiff |
2016-08-30 |
Jim Procter | Merge branch 'develop' into merge/develop_bug/JAL-2154p... |
tree | commitdiff |
2016-08-29 |
Jim Procter | JAL-2154 don’t synthesise multiple CDS|<Acc> sequences... |
tree | commitdiff |
2016-08-29 |
Jim Procter | JAL-2154 filter out dbrefs that already match primary... |
tree | commitdiff |
2016-08-29 |
Jim Procter | JAL-2154 refactor if (for easier breakpoint) and formatting |
tree | commitdiff |
2016-08-29 |
gmungoc | JAL-1841 robustness fix bug/JAL-1841rnaSecStr |
tree | commitdiff |
2016-08-26 |
Jim Procter | JAL-2154 check that xref is a coding xref before adding... |
tree | commitdiff |
2016-08-26 |
Jim Procter | JAL-2154 don’t add any remaining xrefed sequences of... |
tree | commitdiff |
2016-08-26 |
gmungoc | Merge branch 'develop' into bug/JAL-1841rnaSecStr |
tree | commitdiff |
2016-08-26 |
gmungoc | JAL-2049 set Ensembl variant source to ENSEMBL if ... |
tree | commitdiff |
2016-08-25 |
Jim Procter | JAL-2154 JAL-2106 transfer primary refs to CDS for... |
tree | commitdiff |
2016-08-25 |
Jim Procter | JAL-2154 copy and paste error |
tree | commitdiff |
2016-08-25 |
Jim Procter | Merge branch 'trailm' into trial_fixMakeCDSDBRefPropagation |
tree | commitdiff |
2016-08-25 |
Jim Procter | Merge branch 'refactor/JAL-2106_sourceDbRef_revision... |
tree | commitdiff |
2016-08-25 |
Jim Procter | Merge branch 'develop' into refactor/JAL-2106_sourceDbR... |
tree | commitdiff |
2016-08-24 |
Jim Procter | JAL-2106 removed setSourceDBRef, refactor getSourceDBRe... |
tree | commitdiff |
2016-08-23 |
Jim Procter | JAL-2154 propagate from contig to CDS after constructin... |
tree | commitdiff |
2016-08-23 |
Jim Procter | JAL-2154 should only add mappings between dataset sequences |
tree | commitdiff |
2016-08-23 |
Jim Procter | JAL-2154 - only copy DBRef from contig to new CDS seque... |
tree | commitdiff |
2016-08-23 |
Jim Procter | Merge branch 'develop' into bug/JAL-2154projectMappings |
tree | commitdiff |
2016-08-22 |
Jim Procter | JAL-2154 verify recovered xref sequence not already... |
tree | commitdiff |
2016-08-22 |
Jim Procter | JAL-2154 regression warning - should never recover... |
tree | commitdiff |
2016-08-22 |
gmungoc | JAL-2011 adjust method to fix failing unit test |
tree | commitdiff |
next |