patch to fix occasional arrayoutofbounds exception when working with hidden columns...
[jalview.git] / src / jalview / appletgui / AlignFrame.java
2009-03-17 jproctersortbytree parameter added and undo re-instated for...
2009-02-06 jproctershowUnconserved and updated reference
2008-11-12 jprocterautomatic scrolling option added to view
2008-09-04 jproctermerge from 2_4_Release branch
2008-06-26 jprocteradded URLEncoder.encode to properly escape CGI encoded...
2008-04-21 jproctercentrecolumnlabels format menu item and parameter added...
2007-11-16 jproctertodo for sortbyPID operating on current selection rathe...
2007-10-27 jproctermust do any modification to menus before they are embed...
2007-10-27 jprocterrefactored embedded menu machinery
2007-10-26 jprocteradd mac dependent use of embedded menu bar rather than...
2007-10-10 jprocterfeatureGroup show/hide and newView methods for applet...
2007-08-01 jprocteradded tree as an applet to application servlet parameter
2007-05-02 jprocterrefactored do and undo() method to take array of alignm...
2007-04-27 amwaterhouseAlignment properties available
2007-04-26 amwaterhouseAlignment Properties required for annotation file
2007-04-25 amwaterhouseExport annotations with properties
2007-04-12 amwaterhouseNumber pad keys can be used in cursor mode
2007-03-23 amwaterhouseslide is transparent to hidden columns
2007-02-27 amwaterhouseUse paintAlignment
2007-02-07 amwaterhouseFormatting
2007-02-01 amwaterhouseremoved deprecated bits
2007-01-31 amwaterhouseDont export annotations if not visible
2007-01-30 amwaterhouseOutput groups in annotation file
2007-01-29 amwaterhouseNew view copies annotations across
2007-01-25 amwaterhouseAnnotations move when full alignment edited
2007-01-25 amwaterhouseOutput annotations
2007-01-24 amwaterhouseoutput now takes alignment, not just sequences
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport
2007-01-19 amwaterhouseexport features/annotations not for import
2007-01-19 amwaterhouseApplet can output and load annotations, features
2007-01-17 amwaterhouseDont set the font of alignFrameMenubarcvs update applet...
2007-01-04 amwaterhouseSend new sequences when firing alignment changed
2006-12-21 amwaterhousegetSequenceAsString
2006-12-06 jproctertypo fix.
2006-11-27 amwaterhouseAllow new window from output sequences
2006-11-23 amwaterhouseIf alignment is closed, then undo performed in visible...
2006-11-23 amwaterhouseIf alignment is closed, then undo performed in visible...
2006-11-23 amwaterhouseIf alignment is closed, then undo performed in visible...
2006-11-23 amwaterhouseIf alignment is closed, then undo performed in visible...
2006-11-22 amwaterhouseView name
2006-11-22 amwaterhouseapplet has multiple views
2006-11-21 amwaterhouseCopy to this implemented
2006-11-21 amwaterhouseAdd more keys
2006-11-20 amwaterhouseembeddedMenus
2006-11-15 amwaterhouseAdd remove seq from multiple views, must fire alignment...
2006-11-14 amwaterhouseCommands, history, consensus, refresh updated
2006-11-13 amwaterhouseColours in viewport
2006-11-09 amwaterhouseCutandpaste used for input/output
2006-10-24 amwaterhouseCommented out for compilation
2006-10-06 amwaterhouseAAFrequency optimized
2006-10-05 amwaterhouseDEFAULT_WIDTH
2006-09-12 amwaterhouseAllow alt button for Mac applet group editing
2006-08-29 amwaterhouseJnet files sent to servlet as annotations
2006-08-21 amwaterhouseheader updated
2006-08-21 amwaterhouse1.1 compatible
2006-08-21 jprocterfixed undo-redo bug, hidden columns are moved with...
2006-08-17 amwaterhouseH key updates
2006-08-17 amwaterhouseHold onto selected region when hiding all columns only
2006-08-17 amwaterhousecontrol and shift
2006-08-17 amwaterhouseControl and alt for toggle hide
2006-08-16 amwaterhouseFire alignment changed if seqs hidden / revealed
2006-08-15 amwaterhouseAdd key listener to scalePanel and annotationPanel
2006-08-15 amwaterhouseWRITEABLE_FORMATS and READABLE_FORMATS string []
2006-08-14 amwaterhouseStockholm parser added
2006-08-11 amwaterhousealignpanel.repaint
2006-08-11 amwaterhouseAlignPanel.repaint
2006-08-10 amwaterhouseCheck selection size before making tree
2006-08-10 amwaterhouseInvert column selection
2006-08-09 amwaterhouseCopy hidden cols to new alignment
2006-08-08 amwaterhouseApplet has hidden regions
2006-07-18 amwaterhouseModified for hidden region/group calculation
2006-07-12 amwaterhouseLaunch full app parameter takes servlet URL
2006-07-12 amwaterhousesequences are private in SequenceGroup
2006-07-07 amwaterhousePrepare for launchFullApplication
2006-06-23 amwaterhouseParse HTML links from jalview features file
2006-06-23 amwaterhouseUses FeaturesFile parser, GFF and Jalview
2006-06-15 amwaterhouseCorrect citation
2006-06-07 amwaterhouseTooltips for features, links for features added
2006-04-10 amwaterhousedel and backspace do the same thing
2006-04-04 amwaterhouseSet keyboard numbers to null if esc pressed
2006-04-04 amwaterhouseKeyboard editing added to applet
2006-03-24 amwaterhouseAnnotation colour scheme added
2006-03-16 amwaterhouseLoad tree
2006-03-08 amwaterhousePack resources in Zip file
2006-02-24 amwaterhouseInform user of groups error parsing
2006-02-15 amwaterhouseFeatures file has startgroup, endgroup
2006-02-13 amwaterhouseParsing features file - dont adjust for alignment position
2006-02-10 amwaterhouseOverview displays features
2006-02-09 amwaterhouseFeature Settings added to Applet
2006-02-09 amwaterhouseNew implementation for holding search results
2006-02-03 amwaterhouseApplet reads in annotation files
2006-01-30 amwaterhouseAllow embedded applet
2005-12-22 amwaterhouseReduced jar size by 20%
2005-12-09 amwaterhouseKeylistener added to frame and seqcanvas
2005-12-06 amwaterhouseafter merge
2005-09-30 amwaterhouseRemove redundancy in Eclipse
2005-09-28 amwaterhouseApplet frame name
2005-09-28 amwaterhouseWrap alignment with annotations
2005-09-22 amwaterhouseCreate instance of FormatAdapter
2005-09-21 amwaterhouseSequences must be aligned before PCA
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