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patch to fix occasional arrayoutofbounds exception when working with hidden columns...
[jalview.git]
/
src
/
jalview
/
appletgui
/
2009-03-31
jprocter
added feature gradient colours and sortby feature score...
tree
|
commitdiff
2009-03-17
jprocter
sortbytree parameter added and undo re-instated for...
tree
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commitdiff
2009-02-06
jprocter
showUnconserved and updated reference
tree
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commitdiff
2008-11-12
jprocter
automatic scrolling option added to view
tree
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commitdiff
2008-09-09
jprocter
tooltip contains non-positional features and popup...
tree
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commitdiff
2008-09-09
jprocter
make URL links from description string when link is...
tree
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commitdiff
2008-09-08
jprocter
introduced and commented out code for generating URLs...
tree
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commitdiff
2008-09-04
jprocter
merge from 2_4_Release branch
tree
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commitdiff
2008-08-20
jprocter
tooltip displays formatted annotation row description...
tree
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commitdiff
2008-08-19
jprocter
fix for arrayoutofbounds bug when secondary structure...
tree
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commitdiff
2008-08-19
jprocter
regex links for launching URL from single click on...
tree
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commitdiff
2008-08-13
jprocter
ensure input data can be recovered for tree and PCA...
tree
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commitdiff
2008-08-11
jprocter
regular expression based URL link generation
tree
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commitdiff
2008-08-06
jprocter
generation of additional URLs for DBRefs on a sequence...
tree
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commitdiff
2008-07-18
jprocter
Sequence label colour stored for each sequence group
tree
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commitdiff
2008-06-26
jprocter
added URLEncoder.encode to properly escape CGI encoded...
tree
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commitdiff
2008-05-02
jprocter
bugfix to avoid null pointer exceptions being raised...
tree
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commitdiff
2008-04-21
jprocter
centrecolumnlabels format menu item and parameter added...
tree
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commitdiff
2008-04-10
jprocter
bug fix for Features/Annotations file parameter parsing...
tree
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commitdiff
2007-12-18
jprocter
incorrect colour-by-sequence when gaps are present...
tree
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commitdiff
2007-11-16
jprocter
todo for sortbyPID operating on current selection rathe...
tree
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commitdiff
2007-11-08
jprocter
initialise treeCanvas before starting loading thread
tree
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commitdiff
2007-10-28
jprocter
begin process of allowing for column selection in wrapp...
tree
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commitdiff
2007-10-28
jprocter
fix display of hidden sequence markers in applet
tree
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commitdiff
2007-10-27
jprocter
must do any modification to menus before they are embed...
tree
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commitdiff
2007-10-27
jprocter
enabled platform dependent embedding of menuBar with...
tree
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commitdiff
2007-10-27
jprocter
fixed bootstrap value rendering to occur only when...
tree
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commitdiff
2007-10-27
jprocter
refactored embedded menu machinery
tree
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commitdiff
2007-10-26
jprocter
add mac dependent use of embedded menu bar rather than...
tree
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commitdiff
2007-10-26
jprocter
use new utility class for platform info
tree
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commitdiff
2007-10-15
jprocter
new features or newly shown group features are placed...
tree
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commitdiff
2007-10-10
jprocter
featureGroup show/hide and newView methods for applet...
tree
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commitdiff
2007-09-06
jprocter
fixes bootstrap bug noted by Chunlong Chen in email...
tree
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commitdiff
2007-08-06
jprocter
null pointer exception blocked redraw of annotation...
tree
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commitdiff
2007-08-01
jprocter
added tree as an applet to application servlet parameter
tree
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commitdiff
2007-07-13
jprocter
pickmanager on sequence and alignment position, vamsas...
tree
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commitdiff
2007-06-18
jprocter
ensure lines are drawn from first alignment column.
tree
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commitdiff
2007-05-22
amwaterhouse
DONT SET PICKING LABEL
tree
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commitdiff
2007-05-15
amwaterhouse
SequenceListener highlights SearchResults, not just...
tree
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commitdiff
2007-05-08
amwaterhouse
set picking label
tree
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commitdiff
2007-05-08
amwaterhouse
instant update when seq colour is pressed
tree
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commitdiff
2007-05-08
amwaterhouse
must specify .CA
tree
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commitdiff
2007-05-08
amwaterhouse
small sphere for alpha carbon
tree
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commitdiff
2007-05-07
amwaterhouse
Dont use gold colouring for highlight
tree
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commitdiff
2007-05-04
amwaterhouse
lastCommand check
tree
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commitdiff
2007-05-03
amwaterhouse
optimize repaints
tree
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commitdiff
2007-05-02
amwaterhouse
convert space to gapchar
tree
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commitdiff
2007-05-02
jprocter
refactored do and undo() method to take array of alignm...
tree
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commitdiff
2007-05-01
amwaterhouse
setVisible flag sent to EditNameDialog
tree
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commitdiff
2007-05-01
amwaterhouse
use jalviewLite to addFrame
tree
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commitdiff
2007-05-01
amwaterhouse
Multiple views/hidden region/undo out of index bug
tree
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commitdiff
2007-05-01
amwaterhouse
Can specify PDB chain to map sequence to - only used...
tree
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commitdiff
2007-04-30
amwaterhouse
setVisible replaces show
tree
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commitdiff
2007-04-27
amwaterhouse
REmove excessive painting
tree
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commitdiff
2007-04-27
amwaterhouse
Repaint after feature added
tree
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commitdiff
2007-04-27
amwaterhouse
Prevent err when editing and overview drawing
tree
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commitdiff
2007-04-27
amwaterhouse
Make sure mainContainer and owner are not null
tree
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commitdiff
2007-04-27
amwaterhouse
Must check that featureGroup is visible for mouse over...
tree
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commitdiff
2007-04-27
amwaterhouse
amendFeatures
tree
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commitdiff
2007-04-27
amwaterhouse
paintAlignment(true)
tree
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commitdiff
2007-04-27
amwaterhouse
Place new feature on top of existing features
tree
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commitdiff
2007-04-27
amwaterhouse
Make sure sequence is in mouse over alignment
tree
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commitdiff
2007-04-27
amwaterhouse
Amend Features
tree
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commitdiff
2007-04-27
amwaterhouse
aligned boxes
tree
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commitdiff
2007-04-27
amwaterhouse
ThresholdIsMin available in applet
tree
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commitdiff
2007-04-27
amwaterhouse
Set black if colour null
tree
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commitdiff
2007-04-27
amwaterhouse
Alignment properties available
tree
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commitdiff
2007-04-26
amwaterhouse
Alignment Properties required for annotation file
tree
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commitdiff
2007-04-25
amwaterhouse
Export annotations with properties
tree
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commitdiff
2007-04-25
jprocter
AlignmentAnnotation: added annotation score attribute...
tree
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commitdiff
2007-04-23
amwaterhouse
getColour method added
tree
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commitdiff
2007-04-19
amwaterhouse
REPLACE added to edit command
tree
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commitdiff
2007-04-18
amwaterhouse
hastext = false
tree
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commitdiff
2007-04-18
amwaterhouse
quality has text false
tree
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commitdiff
2007-04-17
jprocter
bugfix for jalviewApplet run from command line.
tree
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commitdiff
2007-04-17
amwaterhouse
Applet remembers PDBEntries, can launch multiple struct...
tree
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commitdiff
2007-04-17
amwaterhouse
Remove system.out
tree
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commitdiff
2007-04-16
amwaterhouse
drawSequence must be synchronized
tree
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commitdiff
2007-04-12
amwaterhouse
Number pad keys can be used in cursor mode
tree
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commitdiff
2007-04-11
amwaterhouse
SetTargetColour before dialog.show
tree
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commitdiff
2007-04-11
amwaterhouse
Amend features/annotations in applet
tree
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commitdiff
2007-04-11
amwaterhouse
Used several places
tree
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commitdiff
2007-04-02
jprocter
featuresAdded method introduced for consistency with...
tree
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commitdiff
2007-03-26
amwaterhouse
Jmol calls user colours
tree
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commitdiff
2007-03-26
amwaterhouse
Jalview colour schemes added
tree
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commitdiff
2007-03-26
jprocter
fix single sequence features added rendering bug.
tree
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commitdiff
2007-03-23
amwaterhouse
updates to console
tree
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commitdiff
2007-03-23
amwaterhouse
slide is transparent to hidden columns
tree
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commitdiff
2007-02-27
amwaterhouse
Uncomment graphics 2d bit
tree
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commitdiff
2007-02-27
amwaterhouse
Use paintAlignment
tree
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commitdiff
2007-02-27
amwaterhouse
jmol added
tree
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commitdiff
2007-02-07
amwaterhouse
Formatting
tree
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commitdiff
2007-02-06
amwaterhouse
Allow for frame insets
tree
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commitdiff
2007-02-06
amwaterhouse
Format label
tree
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commitdiff
2007-02-05
amwaterhouse
stop flickering annotationPanel
tree
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commitdiff
2007-02-05
amwaterhouse
image is panel size
tree
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commitdiff
2007-02-02
amwaterhouse
catch control down before editing null pointer
tree
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commitdiff
2007-02-01
amwaterhouse
removed deprecated bits
tree
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commitdiff
2007-02-01
amwaterhouse
Doesnt move with mouse, friendlier for mac users
tree
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commitdiff
2007-02-01
amwaterhouse
Dont repaint tooltip
tree
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commitdiff
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