jmol update
[jalview.git] / src / jalview / appletgui /
2010-09-22 jprocterjmol update
2010-09-14 jprocterstreamlined app and applet jmol console + event handlin...
2010-09-13 jprocterrefactored to remove App reference in Applet (JAL-638)
2010-09-13 jprocterpatched Jmol and code for embedding JmolAppConsole...
2010-08-31 jprocternotes re JAL-623 and JAL-583, new api methods for addin...
2010-08-27 jprocterrevised sequence/structure binding so one structure...
2010-08-25 jproctercorrect initing of JmolViewer to avoid security excepti...
2010-08-25 jprocterexcluded methods related to broken Jmol applet binding...
2010-08-20 jproctercomplete the sequence-structure mapping details. *...
2010-08-20 jprocterrefactor jmol api so it doesn't clash with Swing compon...
2010-08-20 jprocterrefactored external structure viewer binding API calls...
2010-08-20 jprocterimproved debug output when Jmol viewer creation fails
2010-08-20 jprocterextend jmol binding handles selection events and add...
2010-08-20 jprocterbinding between JalviewLite alignment windows and some...
2010-08-18 jprocter1.5 annotation removal
2010-08-18 jprocterrefactor to abstract jmol/jalview binding and applet...
2010-08-18 jprocterrefactor to jalview.api methods
2010-07-21 jprocterURLs that begin with javascript: are opened in the...
2010-06-29 jprocterupgrading structure/sequence binding so that a structur...
2010-06-29 jprocternew ajax api methods for linking existing jmol viewers...
2010-06-17 jprocterremove source annotations
2010-06-17 jprocterupdate to Jmol series 12 (JAL-582)
2010-06-11 jprocterpatched for JAL-531 - only display full symbol distribu...
2010-06-06 jprocterpatch for JAL-542
2010-06-04 jproctercorrect popup menu, ensure panel doesn't disappear...
2010-06-04 jprocterfirst patch for JAL-563 - attempt to relayout annotatio...
2010-06-03 jprocterpatch re JAL-554
2010-04-30 jproctersort by length
2010-04-30 jprocterjalview 2.5 release banner
2010-04-29 jprocterisAligned assertion (bug 0008144)
2010-04-29 jprocterhide/show selected region menu entries and key bindings
2010-04-29 jprocternew selection manipulation method
2010-04-29 jprocterpopup menu toggles between graduated colour and single...
2010-04-28 jprocterosx button colouring issue
2010-04-28 jprocterfind incrementally searches ID then subsequence matches...
2010-04-28 jproctermake groups from selection
2010-04-26 jprocternew applet parameters: heightScale and widthScale
2010-04-26 jprocterbuild date output in the About box, and build details...
2010-04-23 jprocterfix for bug #8333
2010-04-23 jprocterfix for bug #62456
2010-04-23 jprocterported logo rendering and label fit to column width...
2010-04-23 jprocterported basic elements of logo and group annotation...
2010-04-23 jprocterrefresh table method
2010-04-23 jprocter1.1 compatibility
2010-04-23 jprocter1.1 compatibility and refresh table method
2010-04-16 jproctergraduated feature color editing
2010-04-16 jprocterexport graduated feature colors
2010-04-01 jproctertodo
2010-02-10 jproctertodos re adding groupUrl menu item code
2009-11-06 jprocterbetter formed generic select residue X expression
2009-10-30 jprocterna pdb: highlight any part of a residue, not just the...
2009-10-27 jprocterfix null pointer exception in redraw for short sequence...
2009-09-03 jprocterallow middle-button drag to change height of annotation...
2009-08-03 jprocterfix feature creation for selected region beyond end...
2009-06-08 jprocterapply gpl development license
2009-06-01 jprocteronly make a link menu when there are links
2009-06-01 jproctermaxcolour is default colour for no-score features
2009-03-31 jprocteradded feature gradient colours and sortby feature score...
2009-03-17 jproctersortbytree parameter added and undo re-instated for...
2009-02-06 jproctershowUnconserved and updated reference
2008-11-12 jprocterautomatic scrolling option added to view
2008-09-09 jproctertooltip contains non-positional features and popup...
2008-09-09 jproctermake URL links from description string when link is...
2008-09-08 jprocterintroduced and commented out code for generating URLs...
2008-09-04 jproctermerge from 2_4_Release branch
2008-08-20 jproctertooltip displays formatted annotation row description...
2008-08-19 jprocterfix for arrayoutofbounds bug when secondary structure...
2008-08-19 jprocterregex links for launching URL from single click on...
2008-08-13 jprocterensure input data can be recovered for tree and PCA...
2008-08-11 jprocterregular expression based URL link generation
2008-08-06 jproctergeneration of additional URLs for DBRefs on a sequence...
2008-07-18 jprocterSequence label colour stored for each sequence group
2008-06-26 jprocteradded URLEncoder.encode to properly escape CGI encoded...
2008-05-02 jprocterbugfix to avoid null pointer exceptions being raised...
2008-04-21 jproctercentrecolumnlabels format menu item and parameter added...
2008-04-10 jprocterbug fix for Features/Annotations file parameter parsing...
2007-12-18 jprocterincorrect colour-by-sequence when gaps are present...
2007-11-16 jproctertodo for sortbyPID operating on current selection rathe...
2007-11-08 jprocterinitialise treeCanvas before starting loading thread
2007-10-28 jprocterbegin process of allowing for column selection in wrapp...
2007-10-28 jprocterfix display of hidden sequence markers in applet
2007-10-27 jproctermust do any modification to menus before they are embed...
2007-10-27 jprocterenabled platform dependent embedding of menuBar with...
2007-10-27 jprocterfixed bootstrap value rendering to occur only when...
2007-10-27 jprocterrefactored embedded menu machinery
2007-10-26 jprocteradd mac dependent use of embedded menu bar rather than...
2007-10-26 jprocteruse new utility class for platform info
2007-10-15 jprocternew features or newly shown group features are placed...
2007-10-10 jprocterfeatureGroup show/hide and newView methods for applet...
2007-09-06 jprocterfixes bootstrap bug noted by Chunlong Chen in email...
2007-08-06 jprocternull pointer exception blocked redraw of annotation...
2007-08-01 jprocteradded tree as an applet to application servlet parameter
2007-07-13 jprocterpickmanager on sequence and alignment position, vamsas...
2007-06-18 jprocterensure lines are drawn from first alignment column.
2007-05-22 amwaterhouseDONT SET PICKING LABEL
2007-05-15 amwaterhouseSequenceListener highlights SearchResults, not just...
2007-05-08 amwaterhouseset picking label
2007-05-08 amwaterhouseinstant update when seq colour is pressed
2007-05-08 amwaterhousemust specify .CA
2007-05-08 amwaterhousesmall sphere for alpha carbon
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