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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
bin
/ JalviewLite.java
2011-02-14
jprocter
JAL-621 - also renamed list of javascript handlers
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2011-01-21
jprocter
extended mouseover message with absolute sequence posit...
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2011-01-18
jprocter
removed securityException caused by accessing class...
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2011-01-18
jprocter
refactored VamsasListener to allow the source of the...
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2011-01-17
jprocter
additional test - koders.com/java/fid4C9593FE80CE8AA811...
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2011-01-17
jprocter
warn user that no JS callbacks will work by default...
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2011-01-17
jprocter
revised default separator string expression to avoid...
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2011-01-12
jprocter
handlers with no specified alignframe broadcast events...
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2011-01-12
jprocter
1.1 compat
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2011-01-12
jprocter
javascript callback for selection, mousover, and functi...
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2010-09-23
jprocter
apply jalview code style
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2010-09-23
jprocter
Jalview 2.6 source licence
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2010-09-07
jprocter
fix for JAL-631
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2010-09-02
jprocter
1.1 compatibility
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2010-08-31
jprocter
notes re JAL-623 and JAL-583, new api methods for addin...
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2010-08-25
jprocter
excluded methods related to broken Jmol applet binding...
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2010-08-20
jprocter
refactored external structure viewer binding API calls...
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2010-06-29
jprocter
new ajax api methods for linking existing jmol viewers...
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2010-06-18
jprocter
new jmol/pdb relates api calls
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2010-04-30
jprocter
jalview 2.5 release banner
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2010-04-26
jprocter
build date output in the About box, and build details...
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2010-04-23
jprocter
default value boolean parameter getter
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2009-11-23
jprocter
initialise current and defaultAlignFrame and debug...
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2009-11-13
jprocter
make fileparse errors easier to debug by dumping file...
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2009-06-08
jprocter
apply gpl development license
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2009-06-01
jprocter
better decoupling of data loading routines for AJAX
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2009-04-04
jprocter
rejigged jmol check thread to run prior to data loading...
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2009-04-04
jprocter
rejigged jmol check thread to run prior to data loading...
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2008-09-04
jprocter
merge from 2_4_Release branch
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2008-08-12
jprocter
added nojmol parameter to disable check for jmol
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2008-08-05
jprocter
showbutton default is true
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2008-08-04
jprocter
added 'showbutton' applet parameter
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2008-05-26
jprocter
minor bugfix for case when PDB sequence strings are...
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2008-04-10
jprocter
bug fix for Features/Annotations file parameter parsing...
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2007-10-27
jprocter
windowclose handler now calls EmbmenuFrame garbage...
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2007-10-26
jprocter
fixed applet API calls so they operate on the embedded...
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2007-10-12
jprocter
added separator parameter with default of '|' to contro...
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2007-10-11
jprocter
remove conflict on javascript api
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2007-10-11
jprocter
static debug flag controlling output of excessive info...
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2007-10-10
jprocter
featureGroup show/hide and newView methods for applet...
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2007-05-08
amwaterhouse
remove system.out
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2007-05-01
amwaterhouse
remove system.out
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2007-05-01
amwaterhouse
Can specify PDB chain to map sequence to - only used...
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2007-04-27
amwaterhouse
Add param to Jmol path
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2007-04-17
amwaterhouse
Applet remembers PDBEntries, can launch multiple struct...
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2007-04-17
amwaterhouse
Add system.out for Mcview / Jmol detection
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2007-03-27
amwaterhouse
Updated PDB loading params
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2007-03-26
jprocter
grammar.
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2007-02-27
amwaterhouse
Launch applet jmol
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2007-02-07
amwaterhouse
Formatting
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2007-02-06
amwaterhouse
Applet params cant read tab character
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2007-02-05
amwaterhouse
applet can define groups as parameters
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2007-02-01
amwaterhouse
removed deprecated bits
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2007-01-25
amwaterhouse
load/get Annotation
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2007-01-24
amwaterhouse
Features output for javascript
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2007-01-19
amwaterhouse
Neeed to know protocol for annotation loading
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2007-01-18
amwaterhouse
File Parsing returns Alignments, not Sequence[]
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2006-11-22
amwaterhouse
frameListener must call close if AlignFrame
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2006-11-20
amwaterhouse
currentAlignFrame is public
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2006-08-21
amwaterhouse
header updated
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2006-08-18
amwaterhouse
treeFile = treeFile
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2006-08-15
amwaterhouse
Correct title for sequence parameter applets
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2006-08-15
amwaterhouse
Sequences can be added as parameter
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2006-08-15
amwaterhouse
WRITEABLE_FORMATS and READABLE_FORMATS string []
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2006-08-11
amwaterhouse
param tree replaces treeFile
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2006-06-22
amwaterhouse
ParseFeaturesFile takes protocol as arg
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2006-06-09
amwaterhouse
readAnnotationFile
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2006-06-07
amwaterhouse
Parameter to show feature settings
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2006-05-17
jprocter
added the jnetfile parameter to specify a JNet concise...
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2006-05-10
amwaterhouse
remove import
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2006-05-01
amwaterhouse
Forces init of alignPanel if annotations added
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2006-03-16
amwaterhouse
Allow loading from Zip files
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2006-03-08
amwaterhouse
IdentifyFile should not be static
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2006-02-08
amwaterhouse
FormatAdapter throws exception
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2006-02-03
amwaterhouse
Reads annotation files
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2005-12-22
amwaterhouse
Allow embedded applet
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2005-12-15
amwaterhouse
SetMenuBar(null) when closing frames. Prevents a bug...
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2005-12-12
amwaterhouse
GetAlignment uses active alignment window
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2005-12-09
amwaterhouse
Only load the tree file once, for first alignment
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2005-12-06
amwaterhouse
after merge
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2005-09-28
amwaterhouse
Applet frame name
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2005-09-28
amwaterhouse
Set frame size each applet
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2005-09-28
amwaterhouse
New params
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2005-09-22
amwaterhouse
Create instance of FormatAdapter
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2005-09-15
amwaterhouse
Applet has main method, excutable
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2005-08-09
amwaterhouse
Can give a name to new browser window
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2005-06-30
amwaterhouse
Formatting changes
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2005-06-14
amwaterhouse
Set background colour of applet RGB
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2005-06-08
amwaterhouse
Formatted source
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2005-06-08
amwaterhouse
GPL license added
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2005-05-04
amwaterhouse
Applet files
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