source.jalview.org Git - jalview.git/history

git://source.jalview.org / jalview.git / history

2009-04-04	jprocter	rejigged jmol check thread to run prior to data loading...	tree \| commitdiff
2009-04-04	jprocter	rejigged jmol check thread to run prior to data loading...	tree \| commitdiff
2009-03-17	jprocter	sortbytree/nosortbytree and defprop arguments. (defprop...	tree \| commitdiff
2009-03-17	jprocter	new sortbytree default config property	tree \| commitdiff
2009-02-06	jprocter	showunconserved preference	tree \| commitdiff
2008-12-04	jprocter	added local das sequence source CLI and documentation	tree \| commitdiff
2008-12-04	jprocter	allow sequence source to be specified as sequence:mydas...	tree \| commitdiff
2008-12-04	jprocter	local das source properties string constants and routin...	tree \| commitdiff
2008-09-08	jprocter	view settings in view submenu and user preferences...	tree \| commitdiff
2008-09-04	jprocter	merge from 2_4_Release branch	tree \| commitdiff
2008-08-12	jprocter	added nojmol parameter to disable check for jmol	tree \| commitdiff
2008-08-05	jprocter	showbutton default is true	tree \| commitdiff
2008-08-04	jprocter	added 'showbutton' applet parameter	tree \| commitdiff
2008-07-18	jprocter	prevent exception when no default timeout is specified	tree \| commitdiff
2008-06-30	jprocter	safer retrieval of groovy scripts from URLs	tree \| commitdiff
2008-05-26	jprocter	minor bugfix for case when PDB sequence strings are...	tree \| commitdiff
2008-04-29	jprocter	comments and version wget ping timeout fix for when...	tree \| commitdiff
2008-04-21	jprocter	added centre annotation labels menu entry (and commente...	tree \| commitdiff
2008-04-10	jprocter	bug fix for Features/Annotations file parameter parsing...	tree \| commitdiff
2008-02-22	jprocter	typo for AXISLOGLEVEL constant	tree \| commitdiff
2008-01-29	jprocter	groovy scripts can be read from stdin	tree \| commitdiff
2008-01-11	jprocter	added groovy argument for launching a groovy script...	tree \| commitdiff
2008-01-11	jprocter	memory monitor, garbage collection and changed menu...	tree \| commitdiff
2007-11-12	jprocter	javadoc and introduction of dasserver and fetchdas...	tree \| commitdiff
2007-11-12	jprocter	begun adding string constants for source properties	tree \| commitdiff
2007-10-27	jprocter	windowclose handler now calls EmbmenuFrame garbage...	tree \| commitdiff
2007-10-26	jprocter	fixed applet API calls so they operate on the embedded...	tree \| commitdiff
2007-10-12	jprocter	added separator parameter with default of '\|' to contro...	tree \| commitdiff
2007-10-11	jprocter	remove conflict on javascript api	tree \| commitdiff
2007-10-11	jprocter	static debug flag controlling output of excessive info...	tree \| commitdiff
2007-10-10	jprocter	featureGroup show/hide and newView methods for applet...	tree \| commitdiff
2007-09-28	jprocter	javadoc for jalview_properties tags	tree \| commitdiff
2007-08-01	jprocter	added the '-tree' parameter to open a tree from the...	tree \| commitdiff
2007-07-30	jprocter	test cc change revoked.	tree \| commitdiff
2007-07-30	jprocter	test cc	tree \| commitdiff
2007-05-28	jprocter	loglevel property constants and castor validation logge...	tree \| commitdiff
2007-05-08	amwaterhouse	remove system.out	tree \| commitdiff
2007-05-04	amwaterhouse	New example file for version 2.3	tree \| commitdiff
2007-05-04	amwaterhouse	New example file for version 2.3	tree \| commitdiff
2007-05-01	amwaterhouse	remove system.out	tree \| commitdiff
2007-05-01	amwaterhouse	Can specify PDB chain to map sequence to - only used...	tree \| commitdiff
2007-04-27	amwaterhouse	Add param to Jmol path	tree \| commitdiff
2007-04-26	jprocter	groovy support without compile-time dependency.	tree \| commitdiff
2007-04-17	amwaterhouse	Applet remembers PDBEntries, can launch multiple struct...	tree \| commitdiff
2007-04-17	amwaterhouse	Add system.out for Mcview / Jmol detection	tree \| commitdiff
2007-03-27	amwaterhouse	Updated PDB loading params	tree \| commitdiff
2007-03-26	jprocter	grammar.	tree \| commitdiff
2007-02-27	amwaterhouse	Launch applet jmol	tree \| commitdiff
2007-02-07	amwaterhouse	Formatting	tree \| commitdiff
2007-02-06	jprocter	hardwired default user questionnaire url and by default...	tree \| commitdiff
2007-02-06	amwaterhouse	Applet params cant read tab character	tree \| commitdiff
2007-02-05	jprocter	command line hook for questionnaire url argument.	tree \| commitdiff
2007-02-05	amwaterhouse	applet can define groups as parameters	tree \| commitdiff
2007-02-02	amwaterhouse	LookandFeel must be set in headless state as window...	tree \| commitdiff
2007-02-01	amwaterhouse	removed deprecated bits	tree \| commitdiff
2007-01-25	amwaterhouse	load/get Annotation	tree \| commitdiff
2007-01-24	amwaterhouse	Features output for javascript	tree \| commitdiff
2007-01-19	amwaterhouse	Neeed to know protocol for annotation loading	tree \| commitdiff
2007-01-18	amwaterhouse	File Parsing returns Alignments, not Sequence[]	tree \| commitdiff
2006-12-19	amwaterhouse	org.vamsas is now uk.ac.vamsas	tree \| commitdiff
2006-11-22	amwaterhouse	frameListener must call close if AlignFrame	tree \| commitdiff
2006-11-20	amwaterhouse	currentAlignFrame is public	tree \| commitdiff
2006-11-06	amwaterhouse	Remember fileName in alignFrame	tree \| commitdiff
2006-11-02	amwaterhouse	Use system path separator char	tree \| commitdiff
2006-10-27	amwaterhouse	Rename old properties file before writing new	tree \| commitdiff
2006-10-09	jprocter	fixed log4j complaints for vamsas logging (again)	tree \| commitdiff
2006-10-09	jprocter	fixed log4j complaints for vamsas logging.	tree \| commitdiff
2006-10-09	jprocter	imported Vamsas bindings and alpha vamsas client code...	tree \| commitdiff
2006-09-11	amwaterhouse	Error message if file not found moved for headless...	tree \| commitdiff
2006-08-21	amwaterhouse	header updated	tree \| commitdiff
2006-08-18	amwaterhouse	treeFile = treeFile	tree \| commitdiff
2006-08-15	amwaterhouse	Correct title for sequence parameter applets	tree \| commitdiff
2006-08-15	amwaterhouse	Sequences can be added as parameter	tree \| commitdiff
2006-08-15	amwaterhouse	WRITEABLE_FORMATS and READABLE_FORMATS string []	tree \| commitdiff
2006-08-11	amwaterhouse	param tree replaces treeFile	tree \| commitdiff
2006-08-10	amwaterhouse	file: is a URL	tree \| commitdiff
2006-07-07	amwaterhouse	Colour argument added, to mirror applet view	tree \| commitdiff
2006-06-22	amwaterhouse	ParseFeaturesFile takes protocol as arg	tree \| commitdiff
2006-06-09	amwaterhouse	readAnnotationFile	tree \| commitdiff
2006-06-09	amwaterhouse	parseFeaturesFile	tree \| commitdiff
2006-06-07	amwaterhouse	Parameter to show feature settings	tree \| commitdiff
2006-05-17	jprocter	added the jnetfile parameter to specify a JNet concise...	tree \| commitdiff
2006-05-11	amwaterhouse	Recently loaded files, urls, append sequences to Alignment	tree \| commitdiff
2006-05-10	amwaterhouse	remove import	tree \| commitdiff
2006-05-01	amwaterhouse	Forces init of alignPanel if annotations added	tree \| commitdiff
2006-04-07	amwaterhouse	ModellerOutput set in preferences	tree \| commitdiff
2006-04-04	amwaterhouse	Add annoations from the command line	tree \| commitdiff
2006-04-04	amwaterhouse	Jalview2XML does not use static load	tree \| commitdiff
2006-03-16	amwaterhouse	Allow loading from Zip files	tree \| commitdiff
2006-03-08	amwaterhouse	IdentifyFile should not be static	tree \| commitdiff
2006-02-08	amwaterhouse	FormatAdapter throws exception	tree \| commitdiff
2006-02-03	amwaterhouse	Reads annotation files	tree \| commitdiff
2006-01-12	jprocter	ensured properties are loaded before loggers are initia...	tree \| commitdiff
2005-12-22	amwaterhouse	Allow embedded applet	tree \| commitdiff
2005-12-15	amwaterhouse	SetMenuBar(null) when closing frames. Prevents a bug...	tree \| commitdiff
2005-12-12	amwaterhouse	GetAlignment uses active alignment window	tree \| commitdiff
2005-12-09	amwaterhouse	Only load the tree file once, for first alignment	tree \| commitdiff
2005-12-06	amwaterhouse	after merge	tree \| commitdiff
2005-10-07	amwaterhouse	Don't exit if file not found and not headless	tree \| commitdiff
2005-09-30	amwaterhouse	Remove redundancy in Eclipse	tree \| commitdiff
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