patch to fix occasional arrayoutofbounds exception when working with hidden columns...
[jalview.git] / src / jalview / bin /
2009-04-04 jprocterrejigged jmol check thread to run prior to data loading...
2009-04-04 jprocterrejigged jmol check thread to run prior to data loading...
2009-03-17 jproctersortbytree/nosortbytree and defprop arguments. (defprop...
2009-03-17 jprocternew sortbytree default config property
2009-02-06 jproctershowunconserved preference
2008-12-04 jprocteradded local das sequence source CLI and documentation
2008-12-04 jprocterallow sequence source to be specified as sequence:mydas...
2008-12-04 jprocterlocal das source properties string constants and routin...
2008-09-08 jprocterview settings in view submenu and user preferences...
2008-09-04 jproctermerge from 2_4_Release branch
2008-08-12 jprocteradded nojmol parameter to disable check for jmol
2008-08-05 jproctershowbutton default is true
2008-08-04 jprocteradded 'showbutton' applet parameter
2008-07-18 jprocterprevent exception when no default timeout is specified
2008-06-30 jproctersafer retrieval of groovy scripts from URLs
2008-05-26 jprocterminor bugfix for case when PDB sequence strings are...
2008-04-29 jproctercomments and version wget ping timeout fix for when...
2008-04-21 jprocteradded centre annotation labels menu entry (and commente...
2008-04-10 jprocterbug fix for Features/Annotations file parameter parsing...
2008-02-22 jproctertypo for AXISLOGLEVEL constant
2008-01-29 jproctergroovy scripts can be read from stdin
2008-01-11 jprocteradded groovy argument for launching a groovy script...
2008-01-11 jproctermemory monitor, garbage collection and changed menu...
2007-11-12 jprocterjavadoc and introduction of dasserver and fetchdas...
2007-11-12 jprocterbegun adding string constants for source properties
2007-10-27 jprocterwindowclose handler now calls EmbmenuFrame garbage...
2007-10-26 jprocterfixed applet API calls so they operate on the embedded...
2007-10-12 jprocteradded separator parameter with default of '|' to contro...
2007-10-11 jprocterremove conflict on javascript api
2007-10-11 jprocterstatic debug flag controlling output of excessive info...
2007-10-10 jprocterfeatureGroup show/hide and newView methods for applet...
2007-09-28 jprocterjavadoc for jalview_properties tags
2007-08-01 jprocteradded the '-tree' parameter to open a tree from the...
2007-07-30 jproctertest cc change revoked.
2007-07-30 jproctertest cc
2007-05-28 jprocterloglevel property constants and castor validation logge...
2007-05-08 amwaterhouseremove system.out
2007-05-04 amwaterhouseNew example file for version 2.3
2007-05-04 amwaterhouseNew example file for version 2.3
2007-05-01 amwaterhouseremove system.out
2007-05-01 amwaterhouseCan specify PDB chain to map sequence to - only used...
2007-04-27 amwaterhouseAdd param to Jmol path
2007-04-26 jproctergroovy support without compile-time dependency.
2007-04-17 amwaterhouseApplet remembers PDBEntries, can launch multiple struct...
2007-04-17 amwaterhouseAdd system.out for Mcview / Jmol detection
2007-03-27 amwaterhouseUpdated PDB loading params
2007-03-26 jproctergrammar.
2007-02-27 amwaterhouseLaunch applet jmol
2007-02-07 amwaterhouseFormatting
2007-02-06 jprocterhardwired default user questionnaire url and by default...
2007-02-06 amwaterhouseApplet params cant read tab character
2007-02-05 jproctercommand line hook for questionnaire url argument.
2007-02-05 amwaterhouseapplet can define groups as parameters
2007-02-02 amwaterhouseLookandFeel must be set in headless state as window...
2007-02-01 amwaterhouseremoved deprecated bits
2007-01-25 amwaterhouseload/get Annotation
2007-01-24 amwaterhouseFeatures output for javascript
2007-01-19 amwaterhouseNeeed to know protocol for annotation loading
2007-01-18 amwaterhouseFile Parsing returns Alignments, not Sequence[]
2006-12-19 amwaterhouseorg.vamsas is now uk.ac.vamsas
2006-11-22 amwaterhouseframeListener must call close if AlignFrame
2006-11-20 amwaterhousecurrentAlignFrame is public
2006-11-06 amwaterhouseRemember fileName in alignFrame
2006-11-02 amwaterhouseUse system path separator char
2006-10-27 amwaterhouseRename old properties file before writing new
2006-10-09 jprocterfixed log4j complaints for vamsas logging (again)
2006-10-09 jprocterfixed log4j complaints for vamsas logging.
2006-10-09 jprocterimported Vamsas bindings and alpha vamsas client code...
2006-09-11 amwaterhouseError message if file not found moved for headless...
2006-08-21 amwaterhouseheader updated
2006-08-18 amwaterhousetreeFile = treeFile
2006-08-15 amwaterhouseCorrect title for sequence parameter applets
2006-08-15 amwaterhouseSequences can be added as parameter
2006-08-15 amwaterhouseWRITEABLE_FORMATS and READABLE_FORMATS string []
2006-08-11 amwaterhouseparam tree replaces treeFile
2006-08-10 amwaterhousefile: is a URL
2006-07-07 amwaterhouseColour argument added, to mirror applet view
2006-06-22 amwaterhouseParseFeaturesFile takes protocol as arg
2006-06-09 amwaterhousereadAnnotationFile
2006-06-09 amwaterhouseparseFeaturesFile
2006-06-07 amwaterhouseParameter to show feature settings
2006-05-17 jprocteradded the jnetfile parameter to specify a JNet concise...
2006-05-11 amwaterhouseRecently loaded files, urls, append sequences to Alignment
2006-05-10 amwaterhouseremove import
2006-05-01 amwaterhouseForces init of alignPanel if annotations added
2006-04-07 amwaterhouseModellerOutput set in preferences
2006-04-04 amwaterhouseAdd annoations from the command line
2006-04-04 amwaterhouseJalview2XML does not use static load
2006-03-16 amwaterhouseAllow loading from Zip files
2006-03-08 amwaterhouseIdentifyFile should not be static
2006-02-08 amwaterhouseFormatAdapter throws exception
2006-02-03 amwaterhouseReads annotation files
2006-01-12 jprocterensured properties are loaded before loggers are initia...
2005-12-22 amwaterhouseAllow embedded applet
2005-12-15 amwaterhouseSetMenuBar(null) when closing frames. Prevents a bug...
2005-12-12 amwaterhouseGetAlignment uses active alignment window
2005-12-09 amwaterhouseOnly load the tree file once, for first alignment
2005-12-06 amwaterhouseafter merge
2005-10-07 amwaterhouseDon't exit if file not found and not headless
2005-09-30 amwaterhouseRemove redundancy in Eclipse
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