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JAL-3829 ensure nulls are not wildcards when retrieving annotation by calcId/label...
[jalview.git] / src / jalview / bin /
2021-09-14 Ben SoaresJAL-2422 More helpful highlighting/user guidance of... tree | commitdiff
2021-04-22 Ben SoaresJAL-3833 Allow setHiDPI and setHiDPIScale to work more... tree | commitdiff
2021-04-18 Ben SoaresJAL-3833 cap the scaling used by HiDPISetting for incor... tree | commitdiff
2021-03-04 Ben SoaresJAL-3594 Allow a channel to use a different preferences... tree | commitdiff
2020-12-14 Ben SoaresJAL-3280 Fixed the version checking URL formulation... Develop-2_11_2_0-d20201215 tree | commitdiff
2020-12-14 Ben SoaresJAL-3594 Allow setting of getdownappbase and getdowndis... tree | commitdiff
2020-12-14 Ben SoaresJAL-3280 Test for remote release build_properties file... tree | commitdiff
2020-12-14 Ben SoaresJAL-3280 fixes after CR-JAL-241. Now only checking... tree | commitdiff
2020-12-14 Ben SoaresJAL-3280 Pass appbase and appdir from getdown to jalvew... tree | commitdiff
2020-12-11 Ben SoaresJAL-3775 JAL-3633 Make java.net.Authenticator code... tree | commitdiff
2020-12-09 Ben SoaresJAL-3594 JAL-3728 Added taskbar icons to desktop and... tree | commitdiff
2020-12-08 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J... tree | commitdiff
2020-12-08 Ben SoaresJAL-3594 Change main window title tree | commitdiff
2020-12-07 Ben SoaresJAL-3594 added BG logo. Changed some named Jalviews... tree | commitdiff
2020-12-04 Ben SoaresJAL-3594 New jalview.util.ChannelProperties to get... tree | commitdiff
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Refactoring a bit of jalview.bin... tree | commitdiff
2020-12-01 Ben SoaresJAL-3660 Fix for specified output format when using... tree | commitdiff
2020-12-01 Ben SoaresJAL-3530 Added a -nowebservicediscovery command line... tree | commitdiff
2020-11-27 Ben SoaresJAL-3660 Fix for specified output format when using... tree | commitdiff
2020-11-13 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to... tree | commitdiff
2020-11-13 Ben SoaresJAL-3757 JAL-3689 Fixed checks for URLs by adding check... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 last minute refinement so password box doesn... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Apply (proxy) button enabled when needed tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Small changes to allow future fitting with... tree | commitdiff
2020-11-13 Ben SoaresJAL-3275 JAL-3633: JAL-3275 Turned Preferences into... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Set proxy preferences before web calls in... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Memory only proxy auth password storage. Open... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 Added Proxy Authentication credentials in... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 Remember system set proxy properties. Add... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 ensure check both or https:// for urls tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 formatting save after cherry-picks tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 Report when scale setting used. tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 New auto-scale 'formula' for linux HiDPI.... tree | commitdiff
2020-11-06 soaresJAL-3609 corrected maxdimension to mindimension. Adjust... tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 removed debugging prints tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 changed property names to something more palat... tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 system properties to force a scale, or automat... tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 Added a -DforceHiDPISetting=true option mainly... tree | commitdiff
2020-11-05 Ben SoaresJAL-3608 cherry pick of 92cb745e7 tree | commitdiff
2020-09-14 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in... tree | commitdiff
2020-08-12 Jim ProcterMerge branch 'task/JAL-3608_property_set_laf_and_tests... tree | commitdiff
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... tree | commitdiff
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 tree | commitdiff
2020-06-26 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress... tree | commitdiff
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop tree | commitdiff
2020-05-04 Ben SoaresJAL-3608 streamlined LaF methods and allow specificying... tree | commitdiff
2020-05-03 Ben SoaresJAL-3608 also look at user pref PREFERRED_LAF tree | commitdiff
2020-05-01 Ben SoaresJAL-3608 Now reporting the actual LookAndFeel in Java... tree | commitdiff
2020-05-01 Ben SoaresJAL-3608 Added java builtin NimbusLookAndFeel option... tree | commitdiff
2020-04-30 Ben SoaresJAL-3608 Enforcing MetalLookAndFeel as default on linux... tree | commitdiff
2020-04-30 Ben SoaresJAL-3608 Added 'metal' option for laf property tree | commitdiff
2020-04-23 soaresJAL-3608 JAL-3416 Added a 'gtk' option. Not currently... tree | commitdiff
2020-04-22 soaresJAL-3608 saved in Eclipse with auto formatting tree | commitdiff
2020-04-22 Ben SoaresJAL-3608 Added CrossPlatform LaF and made configurable... tree | commitdiff
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files tree | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2020-02-27 Ben SoaresJAL-3543 remove debugging output improvement/JAL-3543_dont_report_null_versions_in_java_console tree | commitdiff
2020-02-27 Ben SoaresMerge branch 'develop' into improvement/JAL-3543_dont_r... tree | commitdiff
2020-02-27 Ben SoaresJAL-3543 Conditional reporting of Install4j and Getdown... tree | commitdiff
2020-02-26 Jim ProcterMerge branch 'bug/JAL-3477_memory_max_allocation' into... tree | commitdiff
2020-01-10 Ben SoaresJAL-3477 Javadoc, addition of -jvmmempc and -jvmmemmax... tree | commitdiff
2020-01-09 Ben SoaresJAL-3477 Refactoring based on CR-JAL-189 tree | commitdiff
2020-01-09 Ben SoaresJAL-3477 Javadoc, refactoring and slight changes to... tree | commitdiff
2019-12-06 Ben SoaresJAL-3449 Added more versions to getdown splashscreen... tree | commitdiff
2019-11-22 Ben SoaresJAL-3449 install4j version, install4j template version... tree | commitdiff
2019-11-20 Ben SoaresJAL-3477 A bit of refactoring for the better tree | commitdiff
2019-11-19 Ben SoaresJAL-3210 removing overly complicated logging. Settling... tree | commitdiff
2019-11-18 Ben SoaresJAL-3477 New jvmmemmax config option in getdown and... tree | commitdiff
2019-11-18 Ben SoaresJAL-3477 New sensible default decisions on memory,... tree | commitdiff
2019-11-12 gmungocJAL-3274 resource path correction, code tidying (consta... tree | commitdiff
2019-11-05 gmungocJAL-3210 JAL-3130 skip Taskbar in JalviewJS tree | commitdiff
2019-11-05 gmungocJAL-3210 JAL-3330 use SequenceOntologyLite in JalviewJS tree | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge tree | commitdiff
2019-07-02 Jim ProcterMerge branch 'develop' into tasks/JAL-3311_removeVamsasMenu tree | commitdiff
2019-06-26 Jim ProcterJAL-3334 fix - always load full SO to resolve the seque... tree | commitdiff
2019-06-26 Jim ProcterJAL-3111 get rid of nasty tab characters tree | commitdiff
2019-06-19 Ben SoaresJAL-3321 Last pieces of the getdown-launcher.jar upgrad... tree | commitdiff
2019-06-17 Ben SoaresJAL-3310 JAL-3300 two getdown fixes merged tree | commitdiff
2019-06-17 Jim ProcterJAL-3311 remove menus and documentation relating to... tasks/JAL-3311_removeVamsasMenu tree | commitdiff
2019-06-14 Ben SoaresJAL-3278 A system.out.println turned into a cache.log... tree | commitdiff
2019-06-14 Jim ProcterJAL-3111 report build type and commit in stdout from... tree | commitdiff
2019-06-14 Jim ProcterJAL-3299 JAL-3280 javadoc on BuildDetails bean tree | commitdiff
2019-05-22 Jim ProcterJAL-3274 import build properties and authors resources... Jalview-JS/tasks/JAL-3274-build_details tree | commitdiff
2019-05-21 Ben SoaresJAL-3247 Launcher start improvements. RPM and DEB no... tree | commitdiff
2019-05-20 Ben SoaresJAL-3254 Improved memory setting (allows mem for OS... tree | commitdiff
2019-04-26 Ben SoaresJAL-3233 Added isAMac check for -Xdock:icon addition... tree | commitdiff
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Some fixes in install4j template... tree | commitdiff
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Added lines to check for updates... tree | commitdiff
2019-04-24 Jim ProcterMerge branch 'task/JAL-3225_Integration_Gradle_building... tree | commitdiff
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when... tree | commitdiff
2019-04-05 hansonrfixes for Jalview command-line URI code tree | commitdiff
2019-04-03 hansonrreplacing @j2sNative with @j2sIgnore where appropriate... tree | commitdiff
2019-04-03 hansonrj2sNative clean-up. Fixes problem with second try of... tree | commitdiff
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11 and... tree | commitdiff
2019-03-31 hansonrCache JS adds search of Info for jalview_xxx properties tree | commitdiff
2019-03-27 gmungocJAL-3032 small formatting and isJS() tidy tree | commitdiff
2019-03-27 hansonrreinstating test data for JalviewJS tree | commitdiff
2019-03-27 hansonrcomment out of @j2sNative block tree | commitdiff
2019-03-27 hansonrconsolidation of Platform isJS calls tree | commitdiff
2019-03-27 hansonrisJS cleanup tree | commitdiff
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