git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first
⋅
prev
⋅
next
Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/ bin
2023-08-31
Ben Soares
Merge branch 'features/r2_11_2_alphafold/JAL-629' into...
commit
|
commitdiff
2023-08-31
Ben Soares
JAL-629 Small buglet with getting --seqid
features/r2_11_2_alphafold/JAL-629
commit
|
commitdiff
2023-08-23
Ben Soares
Merge branch 'improvement/JAL-4250_secondary_structure_...
commit
|
commitdiff
2023-08-23
Ben Soares
JAL-4250 Fix one word bug for 'af.createEPS(file, rende...
commit
|
commitdiff
2023-08-18
Ben Soares
Merge branch 'feature/JAL-244_Automatically_adjust_left...
commit
|
commitdiff
2023-08-18
Ben Soares
Merge branch 'improvement/JAL-3830_remove_dock_icon_in_...
commit
|
commitdiff
2023-08-18
Ben Soares
JAL-3416 Remove full height separators between new...
improvement/JAL-3416_FlatLaf_3.2
commit
|
commitdiff
2023-08-17
Ben Soares
Merge branch 'feature/JAL-629_--output_-_means_output_t...
commit
|
commitdiff
2023-08-17
Ben Soares
JAL-3830 JAL-4160 Remove --noheadless as --gui does...
commit
|
commitdiff
2023-08-16
Ben Soares
JAL-3820 JAL-4189 Move checks for java executable symli...
commit
|
commitdiff
2023-08-11
Ben Soares
JAL-629 Much better way of dealing with list of filenam...
commit
|
commitdiff
2023-08-10
Ben Soares
JAL-629 STDOUT documentation. Opt.STDOUT narrower...
commit
|
commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
commit
|
commitdiff
2023-08-10
Ben Soares
JAL-629 Method to use for printStackTrace
commit
|
commitdiff
2023-08-09
Ben Soares
JAL-629 Move more stdout messages to stderr when output...
commit
|
commitdiff
2023-08-09
Ben Soares
JAL-629 Default to FASTA if no format given for output...
commit
|
commitdiff
2023-08-09
Ben Soares
JAL-629 Enable output to STDOUT when specifying output...
commit
|
commitdiff
2023-08-02
Ben Soares
JAL-244 Fix buglet with automatic change in id column...
commit
|
commitdiff
2023-08-01
Ben Soares
JAL-244 More control of automatic idWidth adjustments...
commit
|
commitdiff
2023-07-27
Ben Soares
JAL-244 Allow adjusting Id column width in wrap mode...
commit
|
commitdiff
2023-07-21
Ben Soares
JAL-244 Fixed idWidth labels in headless mode for non...
commit
|
commitdiff
2023-07-10
James Procter
Merge branch 'improvement/JAL-3830_remove_dock_icon_in_...
commit
|
commitdiff
2023-07-07
James Procter
JAL-4217 JAL-629 built in 25s time out waiting for...
commit
|
commitdiff
2023-07-07
James Procter
JAL-629 even more console debug for --structureviewer...
commit
|
commitdiff
2023-07-06
James Procter
JAL-629 liberal defensive coding, comments about refact...
commit
|
commitdiff
2023-07-06
James Procter
JAL-4217 interruptedExceptions should also break any...
commit
|
commitdiff
2023-06-28
Ben Soares
JAL-4001 remove stray --headless mode analytic
commit
|
commitdiff
2023-06-28
Ben Soares
Merge branch 'task/JAL-4001_Plausible_API' into improve...
commit
|
commitdiff
2023-06-28
Ben Soares
JAL-3820 add java and java.exe from JAVAHOME to list...
commit
|
commitdiff
2023-06-28
Ben Soares
JAL-4001 remove headless code from analytics
commit
|
commitdiff
2023-06-28
Ben Soares
JAL-4001 remove headless code from analytics
commit
|
commitdiff
2023-06-28
Ben Soares
JAL-4001 Remove analytics for --headless mode
commit
|
commitdiff
2023-06-27
Ben Soares
JAL-3416 Don't forget java bin in the correct java...
commit
|
commitdiff
2023-06-26
Ben Soares
Merge branch 'develop' into improvement/JAL-3830_remove...
commit
|
commitdiff
2023-06-22
Ben Soares
Merge branch 'develop' into task/JAL-4001_Plausible_API
commit
|
commitdiff
2023-06-22
Ben Soares
JAL-4001 Release_2_11_2 branch with Plausible analytics
commit
|
commitdiff
2023-06-21
James Procter
Merge branch 'patch/JAL-4196_structure_viewer_synchroni...
patch/JAL-4196_structure_viewer_synchronising
commit
|
commitdiff
2023-06-21
Ben Soares
JAL-4001 Rationalise user-agent string into HttpUtils
commit
|
commitdiff
2023-06-21
Ben Soares
JAL-4001 Change wording from google to plausible or...
commit
|
commitdiff
2023-06-20
Ben Soares
JAL-4001 rename the init method
commit
|
commitdiff
2023-06-20
Ben Soares
JAL-4001 Working Plausible analytics
commit
|
commitdiff
2023-06-20
Ben Soares
JAL-4001 Added a genuine client_id (from gtag). Added...
task/JAL-4001_migrate_googleanalytics_to_GA4
commit
|
commitdiff
2023-06-17
Ben Soares
JAL-4001 Check --nousagestats before doing analytics...
commit
|
commitdiff
2023-06-16
Ben Soares
JAL-3830 Take account of --gui taking precedence over...
commit
|
commitdiff
2023-06-16
Ben Soares
JAL-3830 Look for --headless mode and add -Djava.awt...
commit
|
commitdiff
2023-06-16
Ben Soares
JAL-4001 Add a _geo=1 to query string and JSON. Add...
commit
|
commitdiff
2023-06-16
Ben Soares
JAL-4001 Remove jgoogleanalytics code and jar
commit
|
commitdiff
2023-06-16
Ben Soares
JAL-4001 make page_location the same encoding as the...
commit
|
commitdiff
2023-06-08
Ben Soares
JAL-4001 Only send defaultParams for application_launch...
commit
|
commitdiff
2023-06-08
Ben Soares
Merge branch 'develop' into task/JAL-4001_migrate_googl...
commit
|
commitdiff
2023-06-08
James Procter
Merge branch 'develop' into patch/JAL-4196_structure_vi...
commit
|
commitdiff
2023-06-08
James Procter
JAL-4196 report an error if structure view doesn’t...
commit
|
commitdiff
2023-06-08
Ben Soares
JAL-3416 FlatLaf SystemInfo failing in JalviewJS. ...
commit
|
commitdiff
2023-06-08
Ben Soares
Merge branch 'develop' into task/JAL-4001_migrate_googl...
commit
|
commitdiff
2023-06-07
James Procter
JAL-4195 add exception handling for all image output...
commit
|
commitdiff
2023-06-07
James Procter
Merge branch 'patch/JAL-4195_cli_eps_export_npe' into...
commit
|
commitdiff
2023-06-07
James Procter
JAL-4195 catch thrown exceptions (if any) during image...
commit
|
commitdiff
2023-06-07
Ben Soares
Merge branch 'develop' into task/JAL-4001_migrate_googl...
commit
|
commitdiff
2023-06-07
Ben Soares
JAL-4001 GA4 tracking is now ENABLED. Currently loggin...
commit
|
commitdiff
2023-06-06
James Procter
JAL-4160 --colour can now take user defined scheme...
commit
|
commitdiff
2023-06-06
James Procter
JAL-4160 JAL-4195 wait around until alignFrame calculat...
commit
|
commitdiff
2023-06-06
James Procter
JAL-1551 formatting and javadoc for ArgParser rather...
commit
|
commitdiff
2023-06-06
James Procter
JAL-629 - remove TODO from jalview.bin.Jalview since...
commit
|
commitdiff
2023-06-06
James Procter
JAL-4195 Debug message indicating creation of an image...
commit
|
commitdiff
2023-06-06
James Procter
JAL-1551 a bit of javadoc for Jalview.testoutput methods
commit
|
commitdiff
2023-06-05
Ben Soares
JAL-4001 untested GA4 client code
commit
|
commitdiff
2023-06-02
Ben Soares
Merge branch 'develop' into task/JAL-4001_migrate_googl...
commit
|
commitdiff
2023-06-01
Ben Soares
Merge branch 'develop' into improvement/JAL-4193_cl_arg...
commit
|
commitdiff
2023-06-01
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
commit
|
commitdiff
2023-06-01
Ben Soares
JAL-629 fixing test EBIAlphaFoldTest.checkImportPAEToSt...
commit
|
commitdiff
2023-06-01
Ben Soares
JAL-4001 Changed title+message to MessageManager
commit
|
commitdiff
2023-06-01
Ben Soares
JAL-4193 JAL-4194 sessionProperties layer in Cache...
commit
|
commitdiff
2023-06-01
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
commit
|
commitdiff
2023-05-30
Ben Soares
JAL-629 JAL-4121 Added documentation to Help docs and...
commit
|
commitdiff
2023-05-30
Ben Soares
JAL-629 Better formatting of Arg.Opt options in usage...
commit
|
commitdiff
2023-05-30
Ben Soares
JAL-4121 slight refactoring of method name and added...
commit
|
commitdiff
2023-05-29
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
commit
|
commitdiff
2023-05-27
Ben Soares
JAL-4121 Added a NPE check caught in tests. Added ...
commit
|
commitdiff
2023-05-27
Ben Soares
JAL-4121 Store Arg.Opts in bootstrapArgs. Change Opt...
commit
|
commitdiff
2023-05-26
Ben Soares
JAL-4125 Fixed non-closing external viewers, also added...
commit
|
commitdiff
2023-05-26
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
commit
|
commitdiff
2023-05-25
Ben Soares
JAL-3416 JAL-3820 FlatLaf default for everyone, includi...
commit
|
commitdiff
2023-05-25
Ben Soares
JAL-3820 JAL-3830 improvements to script launching...
commit
|
commitdiff
2023-05-25
Ben Soares
JAL-3820 Create and use 'Jalview app' symblinks to...
commit
|
commitdiff
2023-05-24
Ben Soares
JAL-3416 slightly improved colours for tabber pane...
commit
|
commitdiff
2023-05-23
Ben Soares
JAL-629 Updated help docs and fixed structure image...
commit
|
commitdiff
2023-05-23
Ben Soares
JAL-629 Added --structureimage code and formatting...
commit
|
commitdiff
2023-05-22
Ben Soares
JAL-629 --structureimage with formatting args.
commit
|
commitdiff
2023-05-22
James Procter
JAL-1551 spotless
commit
|
commitdiff
2023-05-21
Ben Soares
JAL-629 Clarify sections of arguments with --help-all...
commit
|
commitdiff
2023-05-20
Ben Soares
JAL-4187 JAL-629 JAL-3830 small adjustments after furth...
commit
|
commitdiff
2023-05-20
Ben Soares
JAL-4187 JAL-629 JAL-3830 adjustments to Cygwin and...
commit
|
commitdiff
2023-05-20
Ben Soares
JAL-4160 JAL-3830 Improve jalview.bin.Launcher for...
commit
|
commitdiff
2023-05-20
Ben Soares
JAL-4160 JAL-3830 Improve jalview.bin.Launcher for...
commit
|
commitdiff
2023-05-19
Ben Soares
JAL-4187 JAL-629 JAL-3830 Fix ArgParser to check for...
commit
|
commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
commit
|
commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
commit
|
commitdiff
2023-05-19
Ben Soares
JAL-629 Added Arg.Types and additional --help-type...
commit
|
commitdiff
2023-05-18
Ben Soares
JAL-629 fixes to typed args
commit
|
commitdiff
2023-05-18
Ben Soares
JAL-629 Added 'Type' to args and argvalues
commit
|
commitdiff
next