JAL-3829 ensure nulls are not wildcards when retrieving annotation by calcId/label...
[jalview.git] / src / jalview / bin /
2021-09-14 Ben SoaresJAL-2422 More helpful highlighting/user guidance of...
2021-04-22 Ben SoaresJAL-3833 Allow setHiDPI and setHiDPIScale to work more...
2021-04-18 Ben SoaresJAL-3833 cap the scaling used by HiDPISetting for incor...
2021-03-04 Ben SoaresJAL-3594 Allow a channel to use a different preferences...
2020-12-14 Ben SoaresJAL-3280 Fixed the version checking URL formulation... Develop-2_11_2_0-d20201215
2020-12-14 Ben SoaresJAL-3594 Allow setting of getdownappbase and getdowndis...
2020-12-14 Ben SoaresJAL-3280 Test for remote release build_properties file...
2020-12-14 Ben SoaresJAL-3280 fixes after CR-JAL-241. Now only checking...
2020-12-14 Ben SoaresJAL-3280 Pass appbase and appdir from getdown to jalvew...
2020-12-11 Ben SoaresJAL-3775 JAL-3633 Make java.net.Authenticator code...
2020-12-09 Ben SoaresJAL-3594 JAL-3728 Added taskbar icons to desktop and...
2020-12-08 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J...
2020-12-08 Ben SoaresJAL-3594 Change main window title
2020-12-07 Ben SoaresJAL-3594 added BG logo. Changed some named Jalviews...
2020-12-04 Ben SoaresJAL-3594 New jalview.util.ChannelProperties to get...
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Refactoring a bit of jalview.bin...
2020-12-01 Ben SoaresJAL-3660 Fix for specified output format when using...
2020-12-01 Ben SoaresJAL-3530 Added a -nowebservicediscovery command line...
2020-11-27 Ben SoaresJAL-3660 Fix for specified output format when using...
2020-11-13 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to...
2020-11-13 Ben SoaresJAL-3757 JAL-3689 Fixed checks for URLs by adding check...
2020-11-13 Ben SoaresJAL-3633 last minute refinement so password box doesn...
2020-11-13 Ben SoaresJAL-3633 Apply (proxy) button enabled when needed
2020-11-13 Ben SoaresJAL-3633 Small changes to allow future fitting with...
2020-11-13 Ben SoaresJAL-3275 JAL-3633: JAL-3275 Turned Preferences into...
2020-11-13 Ben SoaresJAL-3633 Set proxy preferences before web calls in...
2020-11-13 Ben SoaresJAL-3633 Memory only proxy auth password storage. Open...
2020-11-12 Ben SoaresJAL-3633 Added Proxy Authentication credentials in...
2020-11-12 Ben SoaresJAL-3633 Remember system set proxy properties. Add...
2020-11-12 Ben SoaresJAL-3633 ensure check both or https:// for urls
2020-11-06 Ben SoaresJAL-3609 formatting save after cherry-picks
2020-11-06 Ben SoaresJAL-3609 Report when scale setting used.
2020-11-06 Ben SoaresJAL-3609 New auto-scale 'formula' for linux HiDPI....
2020-11-06 soaresJAL-3609 corrected maxdimension to mindimension. Adjust...
2020-11-06 Ben SoaresJAL-3609 removed debugging prints
2020-11-06 Ben SoaresJAL-3609 changed property names to something more palat...
2020-11-06 Ben SoaresJAL-3609 system properties to force a scale, or automat...
2020-11-06 Ben SoaresJAL-3609 Added a -DforceHiDPISetting=true option mainly...
2020-11-05 Ben SoaresJAL-3608 cherry pick of 92cb745e7
2020-09-14 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in...
2020-08-12 Jim ProcterMerge branch 'task/JAL-3608_property_set_laf_and_tests...
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax...
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236
2020-06-26 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress...
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop
2020-05-04 Ben SoaresJAL-3608 streamlined LaF methods and allow specificying...
2020-05-03 Ben SoaresJAL-3608 also look at user pref PREFERRED_LAF
2020-05-01 Ben SoaresJAL-3608 Now reporting the actual LookAndFeel in Java...
2020-05-01 Ben SoaresJAL-3608 Added java builtin NimbusLookAndFeel option...
2020-04-30 Ben SoaresJAL-3608 Enforcing MetalLookAndFeel as default on linux...
2020-04-30 Ben SoaresJAL-3608 Added 'metal' option for laf property
2020-04-23 soaresJAL-3608 JAL-3416 Added a 'gtk' option. Not currently...
2020-04-22 soaresJAL-3608 saved in Eclipse with auto formatting
2020-04-22 Ben SoaresJAL-3608 Added CrossPlatform LaF and made configurable...
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop
2020-02-27 Ben SoaresJAL-3543 remove debugging output improvement/JAL-3543_dont_report_null_versions_in_java_console
2020-02-27 Ben SoaresMerge branch 'develop' into improvement/JAL-3543_dont_r...
2020-02-27 Ben SoaresJAL-3543 Conditional reporting of Install4j and Getdown...
2020-02-26 Jim ProcterMerge branch 'bug/JAL-3477_memory_max_allocation' into...
2020-01-10 Ben SoaresJAL-3477 Javadoc, addition of -jvmmempc and -jvmmemmax...
2020-01-09 Ben SoaresJAL-3477 Refactoring based on CR-JAL-189
2020-01-09 Ben SoaresJAL-3477 Javadoc, refactoring and slight changes to...
2019-12-06 Ben SoaresJAL-3449 Added more versions to getdown splashscreen...
2019-11-22 Ben SoaresJAL-3449 install4j version, install4j template version...
2019-11-20 Ben SoaresJAL-3477 A bit of refactoring for the better
2019-11-19 Ben SoaresJAL-3210 removing overly complicated logging. Settling...
2019-11-18 Ben SoaresJAL-3477 New jvmmemmax config option in getdown and...
2019-11-18 Ben SoaresJAL-3477 New sensible default decisions on memory,...
2019-11-12 gmungocJAL-3274 resource path correction, code tidying (consta...
2019-11-05 gmungocJAL-3210 JAL-3130 skip Taskbar in JalviewJS
2019-11-05 gmungocJAL-3210 JAL-3330 use SequenceOntologyLite in JalviewJS
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge
2019-07-02 Jim ProcterMerge branch 'develop' into tasks/JAL-3311_removeVamsasMenu
2019-06-26 Jim ProcterJAL-3334 fix - always load full SO to resolve the seque...
2019-06-26 Jim ProcterJAL-3111 get rid of nasty tab characters
2019-06-19 Ben SoaresJAL-3321 Last pieces of the getdown-launcher.jar upgrad...
2019-06-17 Ben SoaresJAL-3310 JAL-3300 two getdown fixes merged
2019-06-17 Jim ProcterJAL-3311 remove menus and documentation relating to... tasks/JAL-3311_removeVamsasMenu
2019-06-14 Ben SoaresJAL-3278 A system.out.println turned into a cache.log...
2019-06-14 Jim ProcterJAL-3111 report build type and commit in stdout from...
2019-06-14 Jim ProcterJAL-3299 JAL-3280 javadoc on BuildDetails bean
2019-05-22 Jim ProcterJAL-3274 import build properties and authors resources... Jalview-JS/tasks/JAL-3274-build_details
2019-05-21 Ben SoaresJAL-3247 Launcher start improvements. RPM and DEB no...
2019-05-20 Ben SoaresJAL-3254 Improved memory setting (allows mem for OS...
2019-04-26 Ben SoaresJAL-3233 Added isAMac check for -Xdock:icon addition...
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Some fixes in install4j template...
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Added lines to check for updates...
2019-04-24 Jim ProcterMerge branch 'task/JAL-3225_Integration_Gradle_building...
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when...
2019-04-05 hansonrfixes for Jalview command-line URI code
2019-04-03 hansonrreplacing @j2sNative with @j2sIgnore where appropriate...
2019-04-03 hansonrj2sNative clean-up. Fixes problem with second try of...
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11 and...
2019-03-31 hansonrCache JS adds search of Info for jalview_xxx properties
2019-03-27 gmungocJAL-3032 small formatting and isJS() tidy
2019-03-27 hansonrreinstating test data for JalviewJS
2019-03-27 hansonrcomment out of @j2sNative block
2019-03-27 hansonrconsolidation of Platform isJS calls
2019-03-27 hansonrisJS cleanup
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