Merge commit 'alpha/update_2_12_for_2_11_2_series_merge^2' into HEAD
[jalview.git] / src / jalview / bin /
2022-11-21 Jim ProcterMerge commit 'alpha/update_2_12_for_2_11_2_series_merge...
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC...
2021-09-15 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile...
2021-09-14 Ben SoaresJAL-2422 More helpful highlighting/user guidance of...
2021-04-22 Ben SoaresJAL-3833 Allow setHiDPI and setHiDPIScale to work more...
2021-04-18 Ben SoaresJAL-3833 cap the scaling used by HiDPISetting for incor...
2021-03-04 Ben SoaresJAL-3594 Allow a channel to use a different preferences...
2020-12-14 Ben SoaresJAL-3280 Fixed the version checking URL formulation... Develop-2_11_2_0-d20201215
2020-12-14 Jim ProcterMerge branch 'Jalview-JS/develop' into merge_js_develop
2020-12-14 Ben SoaresJAL-3594 Allow setting of getdownappbase and getdowndis...
2020-12-14 Ben SoaresJAL-3280 Test for remote release build_properties file...
2020-12-14 Ben SoaresJAL-3280 fixes after CR-JAL-241. Now only checking...
2020-12-14 Ben SoaresJAL-3280 Pass appbase and appdir from getdown to jalvew...
2020-12-11 Ben SoaresJAL-3775 JAL-3633 Make java.net.Authenticator code...
2020-12-11 MateuszJAL-3690 Let's enable web services (seriously this...
2020-12-09 Ben SoaresJAL-3594 JAL-3728 Added taskbar icons to desktop and...
2020-12-08 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J...
2020-12-08 Ben SoaresJAL-3594 Change main window title
2020-12-07 Ben SoaresJAL-3594 added BG logo. Changed some named Jalviews...
2020-12-04 Ben SoaresJAL-3594 New jalview.util.ChannelProperties to get...
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Refactoring a bit of jalview.bin...
2020-12-01 Ben SoaresJAL-3660 Fix for specified output format when using...
2020-12-01 Ben SoaresJAL-3530 Added a -nowebservicediscovery command line...
2020-11-27 Ben SoaresJAL-3660 Fix for specified output format when using...
2020-11-13 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to...
2020-11-13 Ben SoaresJAL-3757 JAL-3689 Fixed checks for URLs by adding check...
2020-11-13 Ben SoaresJAL-3633 last minute refinement so password box doesn...
2020-11-13 Ben SoaresJAL-3633 Apply (proxy) button enabled when needed
2020-11-13 Ben SoaresJAL-3633 Small changes to allow future fitting with...
2020-11-13 Ben SoaresJAL-3275 JAL-3633: JAL-3275 Turned Preferences into...
2020-11-13 Ben SoaresJAL-3633 Set proxy preferences before web calls in...
2020-11-13 Ben SoaresJAL-3633 Memory only proxy auth password storage. Open...
2020-11-12 Ben SoaresJAL-3633 Added Proxy Authentication credentials in...
2020-11-12 Ben SoaresJAL-3633 Remember system set proxy properties. Add...
2020-11-12 Ben SoaresJAL-3633 ensure check both or https:// for urls
2020-11-06 Ben SoaresJAL-3609 formatting save after cherry-picks
2020-11-06 Ben SoaresJAL-3609 Report when scale setting used.
2020-11-06 Ben SoaresJAL-3609 New auto-scale 'formula' for linux HiDPI....
2020-11-06 soaresJAL-3609 corrected maxdimension to mindimension. Adjust...
2020-11-06 Ben SoaresJAL-3609 removed debugging prints
2020-11-06 Ben SoaresJAL-3609 changed property names to something more palat...
2020-11-06 Ben SoaresJAL-3609 system properties to force a scale, or automat...
2020-11-06 Ben SoaresJAL-3609 Added a -DforceHiDPISetting=true option mainly...
2020-11-05 Ben SoaresJAL-3608 cherry pick of 92cb745e7
2020-10-26 Mateusz WaronwyJAL-3690 - introduce shutdown method that cleans up...
2020-09-14 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in...
2020-08-12 Jim ProcterMerge branch 'task/JAL-3608_property_set_laf_and_tests...
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax...
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236
2020-06-30 gmungocJAL-3446 unused imports removed
2020-06-26 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress...
2020-06-18 BobHansonJAL-3659 unnecessary duplication -- test is made in...
2020-06-18 BobHansonJAL-3446 unintentially left training message in code.
2020-06-17 Jim ProcterJAL-3662 JAL-3660 JAL-3561 source formatting
2020-06-17 Jim ProcterJAL-3660 JAL-3561 output alignment as requested file... cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat
2020-06-16 BobHansonJAL-3659 proper headless check; skips setProperty for JS
2020-06-16 BobHansonJAL-3662 simple fix for CLI not using right format...
2020-06-11 BobHansonMerge branch 'Jalview-JS/develop.JAL-3446.ctrlDown...
2020-06-09 BobHansonJAL-3446 from applet; JAL-3374
2020-06-09 BobHansonJAL-3446 from applet - Cache news date fix
2020-06-07 BobHansonJAL-3446 AppletParams
2020-06-07 BobHansonJAL-3446 reorganized JalviewJSApp (accidentally put...
2020-06-07 BobHansonreorganized JalviewJSApp (accidentally put that in...
2020-06-07 BobHansonJAL-3446 JavaScript interface
2020-06-06 BobHansonJAL-3446 adds Jmol viewer embedding.
2020-06-06 BobHansonJAL-3379 JalviewJS-API specs - preliminary
2020-06-05 BobHansonJAL-3446 removes all JalviewJSApp dependency from jalvi...
2020-06-05 BobHansonRefactoring of Jalview, JalviewAppLoader, JalviewApp...
2020-06-03 BobHansonJAL-3664 support for user.home, user.dir, user
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider...
2020-06-02 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider...
2020-06-02 BobHansonJAL-3446 from JAL-3253-applet Desktop and Jws2Discovere...
2020-06-02 BobHansonJAL-3446 test for simpler key mask operation
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet Jalview.java
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet Cache applicationProperti...
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet web page embedding
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet AppletParams + Cache...
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet ArgsParser
2020-06-01 BobHansonJAL-3262 from JAL-3523-applet JalviewApp and JalviewJSApi
2020-05-18 Jim ProcterMerge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop
2020-05-04 Ben SoaresJAL-3608 streamlined LaF methods and allow specificying...
2020-05-03 Ben SoaresJAL-3608 also look at user pref PREFERRED_LAF
2020-05-01 Ben SoaresJAL-3608 Now reporting the actual LookAndFeel in Java...
2020-05-01 Ben SoaresJAL-3608 Added java builtin NimbusLookAndFeel option...
2020-04-30 Ben SoaresJAL-3608 Enforcing MetalLookAndFeel as default on linux...
2020-04-30 Ben SoaresJAL-3608 Added 'metal' option for laf property
2020-04-23 Jim ProcterMerge branch 'develop' into alpha/JAL-3362_Jalview_212_...
2020-04-23 soaresJAL-3608 JAL-3416 Added a 'gtk' option. Not currently...
2020-04-22 soaresJAL-3608 saved in Eclipse with auto formatting
2020-04-22 Ben SoaresJAL-3608 Added CrossPlatform LaF and made configurable...
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop
2020-02-27 Ben SoaresJAL-3543 remove debugging output improvement/JAL-3543_dont_report_null_versions_in_java_console
2020-02-27 Ben SoaresMerge branch 'develop' into improvement/JAL-3543_dont_r...
2020-02-27 Ben SoaresJAL-3543 Conditional reporting of Install4j and Getdown...
2020-02-26 Jim ProcterMerge branch 'bug/JAL-3477_memory_max_allocation' into...
2020-01-10 Ben SoaresJAL-3477 Javadoc, addition of -jvmmempc and -jvmmemmax...
2020-01-09 Ben SoaresJAL-3477 Refactoring based on CR-JAL-189
next