modified castor-1.1 library and refactored uk.ac.vamsas
[jalview.git] / src / jalview / commands /
2007-05-04 amwaterhouseAnnotations do not extend when full alignment is adjusted
2007-05-02 jprocterrefactored do and undo() method to take array of alignm...
2007-04-27 jprocterbugfix for deleted annotation undo
2007-04-25 jprocterAlignmentAnnotation: added annotation score attribute...
2007-04-19 jprocterensure edit command gapChar is updated and used for...
2007-04-19 amwaterhouseREPLACE added to edit command
2007-04-18 amwaterhousePad gaps when annotation editing
2007-04-17 jprocterpaste/cut now adds or removes associated AlignmentAnnot...
2007-02-27 amwaterhousejmol added
2007-02-07 amwaterhouseFormatting
2007-02-05 amwaterhouseAlignment editing columns 0 and 1 fixed
2007-02-05 amwaterhouseFixed bug in trim right annotation adjust
2007-02-05 amwaterhouseFixed bug in trim right annotation adjust
2007-02-02 amwaterhousegetWidth -1 for trim right
2007-02-02 amwaterhousecheck annotation size when cutting
2007-01-31 amwaterhouseAdjust features when cutting and pasting
2007-01-26 amwaterhouseAdjusts annotations for sequence edits
2007-01-25 amwaterhouseAnnotation adjustment moved to EditCommand
2007-01-24 amwaterhouseThis constructor is never called
2006-12-05 amwaterhouseSequence is char []
2006-11-30 amwaterhousechar array replaces string for cuts
2006-11-21 amwaterhouseUndo cut from end of alignment, padding on
2006-11-15 amwaterhouseMust be able to find originating alignment modified
2006-10-26 amwaterhouseReturns number of columns deleted
2006-10-26 amwaterhouseRemove system.out
2006-10-26 amwaterhousecheck command.string[i] is not null
2006-10-26 amwaterhouseSequence length maybe less than end
2006-10-26 amwaterhouseKnown bugs fixed
2006-10-25 amwaterhouseAdjusts columnSelection correctly
2006-10-24 amwaterhouseCommands which can be done, or undone