source.jalview.org Git - jalview.git/history - src/jalview/datamodel/AlignmentAnnotation.java

git://source.jalview.org / jalview.git / history

[jalview.git] / src / jalview / datamodel / AlignmentAnnotation.java

2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-09-03	jprocter	JAL-1153 ensure _linecolour is copied in copy constructor	blob \| commitdiff \| diff to current
2012-08-29	jprocter	JAL-1153 new runtime property set to first non-null...	blob \| commitdiff \| diff to current
2012-05-22	jprocter	update the copy constructor	blob \| commitdiff \| diff to current
2011-11-03	jprocter	(JAL-811) new 'annotation type' field for marking annot...	blob \| commitdiff \| diff to current
2011-10-28	jprocter	JAL-580 ensure WUSS annotation string is up to date...	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-10-04	jprocter	Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-08-18	jprocter	fix for JAL-701 - ensure '<' appears in tooltip in...	blob \| commitdiff \| diff to current
2011-07-25	janengelhardt	Further structure accessing feature	blob \| commitdiff \| diff to current
2011-07-25	janengelhardt	'Update to Covariaton color scheme' merge; JAL-580	blob \| commitdiff \| diff to current
2011-07-25	janengelhardt	Start merging of Laurens Code	blob \| commitdiff \| diff to current
2011-01-05	jprocter	graphThreshold not being copied by constructor	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2010-04-28	jprocter	group/annotation association housekeeping	blob \| commitdiff \| diff to current
2010-04-23	jprocter	javadoc	blob \| commitdiff \| diff to current
2010-04-16	jprocter	patch for bug #36198 - more to follow on Monday.	blob \| commitdiff \| diff to current
2010-03-22	jprocter	todo and sensible default setting of min/max for histog...	blob \| commitdiff \| diff to current
2010-03-11	jprocter	individual label format settings for each annotation...	blob \| commitdiff \| diff to current
2009-08-21	jprocter	todo	blob \| commitdiff \| diff to current
2009-07-24	jprocter	optional sequencegroup ref for annotation row	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2008-08-20	jprocter	tooltip displays formatted annotation row description...	blob \| commitdiff \| diff to current
2008-05-01	jprocter	fix for unicode char labels causing arrayOutOfBoundsExc...	blob \| commitdiff \| diff to current
2008-02-22	jprocter	possible fix for stockhom ss-annotation re-creation...	blob \| commitdiff \| diff to current
2007-11-30	jprocter	null pointer bugfix	blob \| commitdiff \| diff to current
2007-10-02	jprocter	convenience constructor for duplicating an annotation...	blob \| commitdiff \| diff to current
2007-05-28	jprocter	fix compact annotation array routine	blob \| commitdiff \| diff to current
2007-05-02	jprocter	checks for negative start column in restrict	blob \| commitdiff \| diff to current
2007-05-02	amwaterhouse	Padgaps is false by default	blob \| commitdiff \| diff to current
2007-05-01	amwaterhouse	Pad gaps method	blob \| commitdiff \| diff to current
2007-04-30	jprocter	pad should leave null annotations array null	blob \| commitdiff \| diff to current
2007-04-30	jprocter	convenient creation of 'score only' annotation.	blob \| commitdiff \| diff to current
2007-04-27	amwaterhouse	padGaps moved	blob \| commitdiff \| diff to current
2007-04-26	jprocter	score is a double, fix bugs for score only annotation...	blob \| commitdiff \| diff to current
2007-04-26	jprocter	score and visible copy construction	blob \| commitdiff \| diff to current
2007-04-26	jprocter	fix for null annotations	blob \| commitdiff \| diff to current
2007-04-25	amwaterhouse	alignmentProperties added	blob \| commitdiff \| diff to current
2007-04-25	jprocter	AlignmentAnnotation: added annotation score attribute...	blob \| commitdiff \| diff to current
2007-04-23	amwaterhouse	Check for null displayCharacters	blob \| commitdiff \| diff to current
2007-04-20	jprocter	fix null annotation values	blob \| commitdiff \| diff to current
2007-04-19	jprocter	bugfix	blob \| commitdiff \| diff to current
2007-04-19	jprocter	padGaps flag in copy constructor	blob \| commitdiff \| diff to current
2007-04-19	jprocter	copying sequenceMapping, restrict(alstart/end) and...	blob \| commitdiff \| diff to current
2007-04-18	amwaterhouse	Validate range for all annotations	blob \| commitdiff \| diff to current
2007-04-18	amwaterhouse	Pad gaps when annotation editing	blob \| commitdiff \| diff to current
2007-04-18	amwaterhouse	Check values not null in copy constructor	blob \| commitdiff \| diff to current
2007-04-18	jprocter	java 1.1 compliance	blob \| commitdiff \| diff to current
2007-04-17	jprocter	copy constructors and AlignmentAnnotation sequenceRef...	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	Formatting	blob \| commitdiff \| diff to current
2007-01-30	amwaterhouse	Check valid residues in ss	blob \| commitdiff \| diff to current
2007-01-26	amwaterhouse	AnnotationId is hashcode of object	blob \| commitdiff \| diff to current
2007-01-25	amwaterhouse	Annotation adjustment moved to EditCommand	blob \| commitdiff \| diff to current
2007-01-24	amwaterhouse	AdjustAnnotations needs position, number and insert	blob \| commitdiff \| diff to current
2007-01-18	amwaterhouse	Is secondary structure label modified	blob \| commitdiff \| diff to current
2006-12-14	amwaterhouse	Watch out for - symbol lin jnet files	blob \| commitdiff \| diff to current
2006-12-14	amwaterhouse	Are the labels all secondary Strutures? are the display...	blob \| commitdiff \| diff to current
2006-10-06	jprocter	javadoc	blob \| commitdiff \| diff to current
2006-08-29	amwaterhouse	SequenceMapping updated	blob \| commitdiff \| diff to current
2006-08-21	amwaterhouse	header updated	blob \| commitdiff \| diff to current
2006-08-21	jprocter	fix for truncation of sequence associated annotation...	blob \| commitdiff \| diff to current
2006-08-20	jprocter	javadoc	blob \| commitdiff \| diff to current
2006-07-07	amwaterhouse	Checks on drawing characters and if sequence ref has...	blob \| commitdiff \| diff to current
2006-05-15	amwaterhouse	All or nothing drawing display char	blob \| commitdiff \| diff to current
2006-05-10	amwaterhouse	Correction for sequences with start not equal to 1	blob \| commitdiff \| diff to current
2006-05-10	amwaterhouse	Create sequence mapping for annotations	blob \| commitdiff \| diff to current
2006-02-24	amwaterhouse	Typo	blob \| commitdiff \| diff to current
2006-02-15	amwaterhouse	Removed SuperGroup	blob \| commitdiff \| diff to current
2006-02-03	amwaterhouse	Add annotation with sequence ref updated	blob \| commitdiff \| diff to current
2006-01-30	amwaterhouse	AddAnnotation with start index	blob \| commitdiff \| diff to current
2005-12-22	amwaterhouse	graph now has type, not a boolean	blob \| commitdiff \| diff to current
2005-06-30	amwaterhouse	Formatting changes	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	Formatted source	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	GPL license added	blob \| commitdiff \| diff to current
2005-05-26	amwaterhouse	toString modified	blob \| commitdiff \| diff to current
2005-05-25	amwaterhouse	toString method added	blob \| commitdiff \| diff to current
2005-05-19	amwaterhouse	calculate max and min for graph	blob \| commitdiff \| diff to current
2005-04-01	amwaterhouse	Alignment Annotation added	blob \| commitdiff \| diff to current

RSS Atom