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JAL-2656 recognise non-HTTP URI input streams as gzipped by detecting the gzip magic...
[jalview.git] / src / jalview / datamodel / HiddenColumns.java
2018-11-28 gmungocJAL-3164 redraw complement overview on hide columns bug/JAL-3164complementOverview blob | commitdiff
2018-02-05 kiramtJAL-2759 Fix errant RangeElementsIterator (unit tests... blob | commitdiff | diff to current
2018-02-05 kiramtJAL-2759 Rename getBoundedStartIterator blob | commitdiff | diff to current
2018-02-05 kiramtJAL-2759 Changes to StartRegionIterator after review blob | commitdiff | diff to current
2018-02-01 kiramtJAL-2759 use right iterator for getVisibleColsIterator blob | commitdiff | diff to current
2018-01-31 kiramtJAL-2759 Rationalise VisibleColsIterator and HiddenCols... blob | commitdiff | diff to current
2018-01-31 kiramtJAL-2759 Generalised HiddenColsIterator naming blob | commitdiff | diff to current
2018-01-31 kiramtJAL-2759 minor refactor to hiding bitsets blob | commitdiff | diff to current
2018-01-30 kiramtJAL-2759 Add missing hiddenColumns empty check blob | commitdiff | diff to current
2018-01-30 kiramtJAL-2759 updateForDeletedRegion no longer needed blob | commitdiff | diff to current
2018-01-30 kiramtJAL-2759 Rationalising hidden cols cursor, and sorting... blob | commitdiff | diff to current
2018-01-30 kiramtJAL-2759 comment blob | commitdiff | diff to current
2018-01-30 kiramtJAL-2759 Additional tests and tweaks to numColumns... blob | commitdiff | diff to current
2018-01-30 kiramtJAL-2759 Keep numColumns up to date blob | commitdiff | diff to current
2018-01-29 kiramtJAL-2759 Combine findRegionForColumn code in HiddenColu... blob | commitdiff | diff to current
2018-01-29 kiramtJAL-2759 numColumns reset blob | commitdiff | diff to current
2018-01-29 kiramtJAL-2759 remove redundant hiddenColumns.clear() blob | commitdiff | diff to current
2018-01-29 kiramtJAL-2759 make a new cursor instead of resetting, update... blob | commitdiff | diff to current
2018-01-22 kiramtJAL-2579 Moved locateVisibleStartOfSequence to Sequence... blob | commitdiff | diff to current
2018-01-22 kiramtJAL-2759 Various minor HiddenColumns updates after... blob | commitdiff | diff to current
2018-01-19 kiramtJAL-2759 Changes to getVisibleSequenceStrings after... blob | commitdiff | diff to current
2018-01-19 kiramtJAL-2759 Moved propagateInsertions out of HiddenColumns blob | commitdiff | diff to current
2018-01-19 kiramtJAL-2759 Update to getVisibleStartAndEndIndex after... blob | commitdiff | diff to current
2018-01-18 kiramtJAL-2759 change subtractVisibleColumns and removal... blob | commitdiff | diff to current
2018-01-18 kiramtJAL-2759 Updated test blob | commitdiff | diff to current
2018-01-18 kiramtJAL-2759 unit tests (incomplete) blob | commitdiff | diff to current
2018-01-16 kiramtJAL-2759 setup hideBitSet over range for hideInsertions blob | commitdiff | diff to current
2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenC... blob | commitdiff | diff to current
2018-01-16 kiramtJAL-2759 Replaced StringBuffer with StringBuilder;... blob | commitdiff | diff to current
2018-01-15 kiramtJAL-2759 More compact iterator usage; after review blob | commitdiff | diff to current
2018-01-15 kiramtJAL-2759 First pass instantiate hiddenColumns collectio... blob | commitdiff | diff to current
2018-01-15 kiramtJAL-2759 getVisContigsIterator returns VisibleContigsIt... blob | commitdiff | diff to current
2018-01-15 kiramtJAL-2759 Rename hideInsertionsFor to hideList, after... blob | commitdiff | diff to current
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review blob | commitdiff | diff to current
2018-01-15 kiramtJAL-2759 Simplified HiddenColumns constructor after... blob | commitdiff | diff to current
2018-01-15 kiramtJAL-2759 Minor doc and naming changes blob | commitdiff | diff to current
2018-01-15 kiramtJAL-2759 Updated absoluteToVisibleColumn doc (prev... blob | commitdiff | diff to current
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC... blob | commitdiff | diff to current
2018-01-15 kiramtJAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol... blob | commitdiff | diff to current
2018-01-15 kiramtJAL-2759 Comments and renaming for has(Many)HiddenColum... blob | commitdiff | diff to current
2018-01-15 kiramtJAL-2759 Tidy up javadoc and naming in HiddenColumnsCur... blob | commitdiff | diff to current
2018-01-15 kiramtJAL-2759 Update to getHiddenBoundaryRight + unit test... blob | commitdiff | diff to current
2017-11-22 kiramtJAL-2759 performance improvements to hideColumns blob | commitdiff | diff to current
2017-11-22 kiramtJAL-2759 performance tweaks blob | commitdiff | diff to current
2017-11-22 kiramtJAL-2759 HiddenColumns test polishing blob | commitdiff | diff to current
2017-11-21 kiramtJAL-2759 corrected old getVisibleBlocksIterator calls... blob | commitdiff | diff to current
2017-11-21 kiramtJAL-2759 Remove getVisibleBlocksIterator call blob | commitdiff | diff to current
2017-11-20 kiramtJAL-2759 cursor option for BoundedStartRegionIterator blob | commitdiff | diff to current
2017-11-20 kiramtJAL-2759 rationalise visible contigs iteration blob | commitdiff | diff to current
2017-11-20 kiramtJAL-2759 improvements to speed up synchronisation;... blob | commitdiff | diff to current
2017-11-17 kiramtJAL-2759 Move isVisible to use cursor blob | commitdiff | diff to current
2017-11-17 kiramtJAL-2759 tidy blob | commitdiff | diff to current
2017-11-17 kiramtJAL-2759 Update tests blob | commitdiff | diff to current
2017-11-17 kiramtJAL-2759 Convert reveal to use cursor blob | commitdiff | diff to current
2017-11-17 kiramtJAL-2759 HiddenColumnsCursor tests blob | commitdiff | diff to current
2017-11-13 kiramtJAL-2759 convert findColumnPosition to use cursor blob | commitdiff | diff to current
2017-11-13 kiramtJAL-2759 Converted getHiddenBoundaryLeft/Right to use... blob | commitdiff | diff to current
2017-11-09 kiramtJAL-2759 make bounds correct for left scrolling with... blob | commitdiff | diff to current
2017-11-06 kiramtJAL-2759 fix getHiddenOffset iterating backwards blob | commitdiff | diff to current
2017-10-13 kiramtJAL-2759 hiddenColumns null check blob | commitdiff | diff to current
2017-10-10 kiramtJAL-2759 Rearranged iterators blob | commitdiff | diff to current
2017-10-09 kiramtJAL-2674 iterator updates blob | commitdiff | diff to current
2017-10-06 kiramtJAL-2674 Last moves to iterators blob | commitdiff | diff to current
2017-10-06 kiramtJAL-2647 stashing blob | commitdiff | diff to current
2017-10-05 kiramtJAL-2674 Removed a stray Vector blob | commitdiff | diff to current
2017-10-05 kiramtJAL-2674 Rationalising iterators and retesting blob | commitdiff | diff to current
2017-10-04 kiramtJAL-2674 Adjustments to hideColumns blob | commitdiff | diff to current
2017-10-04 kiramtJAL-2674 more adjustments to locateVisibleBoundsOfSequence blob | commitdiff | diff to current
2017-10-04 kiramtJAL-2674 Simplify locateVisibleBoundsOfSequence blob | commitdiff | diff to current
2017-10-04 kiramtJAL-2674 tidy blob | commitdiff | diff to current
2017-10-03 kiramtJAL-2674 testing blob | commitdiff | diff to current
2017-10-03 kiramtJAL-2674 working refactor of drawPanel iteration blob | commitdiff | diff to current
2017-10-03 gmungocJAL-2738 copy to spikes/mungo blob | commitdiff | diff to current
2017-10-03 kiramtJAL-2674 2nd attempt to refactor seqcanvas drawing... blob | commitdiff | diff to current
2017-10-02 kiramtJAL-2674 iterator for visible blocks with absolute... blob | commitdiff | diff to current
2017-09-29 kiramtJAL-2674 Tidies blob | commitdiff | diff to current
2017-09-29 kiramtJAL-2674 finish with iterators for now blob | commitdiff | diff to current
2017-09-29 kiramtJAL=2674 Removed getHiddenColumnsCopy blob | commitdiff | diff to current
2017-09-29 kiramtJAL-2674 reverted attempt at visible regions iterator blob | commitdiff | diff to current
2017-09-28 kiramtJAL-2647 more iterators blob | commitdiff | diff to current
2017-09-27 kiramtJAL-2674 Removing most calls to getHiddenColumnsCopy blob | commitdiff | diff to current
2017-09-26 kiramtJAL-2674 Changes to pasting blob | commitdiff | diff to current
2017-09-26 kiramtJAL-2674 HiddenColumns interface tidies blob | commitdiff | diff to current
2017-09-26 kiramtJAL-2647 Added iterators and associated tests and bench... blob | commitdiff | diff to current
2017-09-22 kiramtJAL-2674 add bounds to findHiddenRegionPositions blob | commitdiff | diff to current
2017-09-21 kiramtJAL-2674 Rewrote propagateInsertions blob | commitdiff | diff to current
2017-09-20 kiramtJAL-2674 fix up interface of locateVisibleBoundsOfSequence blob | commitdiff | diff to current
2017-08-16 Jim ProcterJAL-2418 source formatting blob | commitdiff | diff to current
2017-07-24 gmungocspike branch updated from latest features/JAL-2446 blob | commitdiff | diff to current
2017-06-29 kiramtJAL-2597 Fix and unit test bug/JAL-2597 blob | commitdiff | diff to current
2017-06-12 kiramtJAL-2591 Updates following code review blob | commitdiff | diff to current
2017-06-09 gmungocJAL-2446 merged to spike branch blob | commitdiff | diff to current
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea... blob | commitdiff | diff to current
2017-06-08 kiramtJAL-2591 More HiddenColumns refactoring. Tests passing. blob | commitdiff | diff to current
2017-06-07 kiramtJAL-2591 Further refactoring (still incomplete) blob | commitdiff | diff to current
2017-06-07 kiramtJAL-2591 More refactoring (incomplete) blob | commitdiff | diff to current
2017-06-07 kiramtJAL-2591 Hidden columns regions can be output to string... blob | commitdiff | diff to current
2017-06-07 kiramtJAL-2591 updated HiddenColumns::findHiddenRegionPositio... blob | commitdiff | diff to current
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage blob | commitdiff | diff to current
2017-06-06 kiramtJAL-2591 Added readwrite locking on HiddenColumns blob | commitdiff | diff to current
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