javadoc
[jalview.git] / src / jalview / datamodel /
2007-06-17 jprocterjavadoc
2007-05-28 jprocterprototype DBRef and Feature Type semantics (for annotat...
2007-05-28 jprocterfix compact annotation array routine
2007-05-28 jproctercastor mapping unmarshalling logging
2007-05-10 jprocterensure that only annotation referenced in given alignme...
2007-05-10 jprocterbugfix on copy only referenced annotation in copy const...
2007-05-10 jprocterfixed array index out of bounds when not removing align...
2007-05-07 amwaterhousetIndex prevented deletion of last annotation
2007-05-02 jprocterfeature locations are retrieved by associated accession...
2007-05-02 jprocterfeature locations are retrieved by associated accession...
2007-05-02 jprocterdocumentation and proxy call to util.MapList.getToWord...
2007-05-02 jprocteronly return non-empty subsequences when getting selecti...
2007-05-02 jproctersubsequence bound checks and constructor for selectivel...
2007-05-02 jprocterreturn flag indicating if annotations were actually...
2007-05-02 jprocterchecks for negative start column in restrict
2007-05-02 amwaterhousePadgaps is false by default
2007-05-01 amwaterhousePad gaps method
2007-05-01 jprocterjavadoc
2007-05-01 jprocterremoveAlignmentAnnotation only removes annotation objec...
2007-04-30 jprocterpad should leave null annotations array null
2007-04-30 jprocterconvenient creation of 'score only' annotation.
2007-04-27 amwaterhousepadGaps moved
2007-04-27 jproctergetProperties returns nullk for no properties
2007-04-27 jprocterdocumentation and getProperties method
2007-04-26 jprocterget annotation by label string
2007-04-26 jprocterfix '\0' bug from score-only positional annotation
2007-04-26 jprocterscore is a double, fix bugs for score only annotation...
2007-04-26 amwaterhousecolourText = false
2007-04-26 jprocterscore and visible copy construction
2007-04-26 jprocterfix for null annotations
2007-04-26 amwaterhouseremove should be removeElement
2007-04-25 jproctermoving word methods to MapList and begin bug-fix for...
2007-04-25 amwaterhousealignmentProperties added
2007-04-25 jprocterAlignmentAnnotation: added annotation score attribute...
2007-04-24 jprocterbugfix for sequence features mapped to multiple contigs...
2007-04-24 jprocterupdated mapping for EMBL_Services_V1.1.xsd and tested...
2007-04-23 amwaterhouseCheck for null displayCharacters
2007-04-23 amwaterhouseColour is null
2007-04-23 amwaterhouseremove seqref annotations
2007-04-23 amwaterhouseremove alignmentAnnotation added
2007-04-20 jprocterfix null annotation values
2007-04-20 jproctervalue only annotation
2007-04-19 jprocterbugfix
2007-04-19 jproctersequence associated alignment annotation copy for colum...
2007-04-19 jprocterpadGaps flag in copy constructor
2007-04-19 jprocterjavadoc note on padding AlignmentAnnotation to alignmen...
2007-04-19 jproctercopying sequenceMapping, restrict(alstart/end) and...
2007-04-18 amwaterhouseValidate range for all annotations
2007-04-18 amwaterhousePad gaps when annotation editing
2007-04-18 amwaterhouseCheck values not null in copy constructor
2007-04-18 jprocterjava 1.1 compliance
2007-04-17 jprocterascii type
2007-04-17 jproctercopy constructors and AlignmentAnnotation sequenceRef...
2007-04-17 jproctercopy constructor and ascii type change.
2007-04-12 jprocterbasic support for multi-exon CDS features
2007-04-11 amwaterhouseIf hiddenColumns are null, then column is viisble
2007-04-02 amwaterhouseDestroy alignment moved to finalize
2007-04-02 amwaterhouseDestroy aligment method added
2007-03-23 jproctergeneralised feature attribute parsing slightly (no...
2007-03-23 jprocterbugfix for 1.1 conversion.
2007-03-19 jprocterinitial support for EMBL file parsing.
2007-03-19 jprocterequals operation used for canonicalisation of DBRefList...
2007-03-19 jproctermapping implemented by MapList added to DBRefEntry.
2007-03-19 jprocterjavadoc typo
2007-03-19 jproctercopy constructor
2007-02-07 amwaterhouseFormatting
2007-01-31 amwaterhouseUnique name for new group and treegroup
2007-01-31 amwaterhousemake new dataset seq if residues deleted
2007-01-31 amwaterhousecopy feature: check for null values
2007-01-30 amwaterhouseCheck valid residues in ss
2007-01-29 amwaterhouseDescription added
2007-01-26 amwaterhouseAnnotationId is hashcode of object
2007-01-26 amwaterhouseOnly set the sequence oncecvs diff datamodel/Alignment...
2007-01-25 amwaterhouseAnnotation adjustment moved to EditCommand
2007-01-24 amwaterhouseAdjustAnnotations needs position, number and insert
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport
2007-01-19 jprocterdatasetSequence derive method and some checks
2007-01-19 jprocterjavadoc
2007-01-19 jprocteradded sequence feature copy constructor.
2007-01-18 amwaterhouseSet description on copy
2007-01-18 amwaterhouseIs secondary structure label modified
2006-12-21 amwaterhousecheck on sequence length
2006-12-21 amwaterhousegetSequenceAsString
2006-12-21 amwaterhousegetSequenceAsString
2006-12-21 amwaterhouseremove unnecessary import
2006-12-21 jproctertype change
2006-12-14 amwaterhouseWatch out for - symbol lin jnet files
2006-12-14 amwaterhouseAre the labels all secondary Strutures? are the display...
2006-12-07 amwaterhousedont add char[] ref to a string
2006-12-06 jproctergeneral pairwise substitution score models for pairwise...
2006-12-05 amwaterhouseSequence is char []
2006-11-24 amwaterhouseFix load 1 col hidden bug
2006-11-23 amwaterhouseDont make groups of hidden sequences
2006-11-20 amwaterhousewarning message changed
2006-11-20 amwaterhouseMust copy old dbrefs
2006-11-13 amwaterhouseDont readd identical DBRef
2006-11-13 amwaterhouseSequence colour moved to viewport
2006-11-13 amwaterhouseText colour for group
2006-11-08 amwaterhouseSet description
2006-11-08 amwaterhousecurrentSeq and set description in dataset
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