| 2007-04-30 |
jprocter | pad should leave null annotations array null |
tree | commitdiff |
| 2007-04-30 |
jprocter | convenient creation of 'score only' annotation. |
tree | commitdiff |
| 2007-04-27 |
amwaterhouse | padGaps moved |
tree | commitdiff |
| 2007-04-27 |
jprocter | getProperties returns nullk for no properties |
tree | commitdiff |
| 2007-04-27 |
jprocter | documentation and getProperties method |
tree | commitdiff |
| 2007-04-26 |
jprocter | get annotation by label string |
tree | commitdiff |
| 2007-04-26 |
jprocter | fix '\0' bug from score-only positional annotation |
tree | commitdiff |
| 2007-04-26 |
jprocter | score is a double, fix bugs for score only annotation... |
tree | commitdiff |
| 2007-04-26 |
amwaterhouse | colourText = false |
tree | commitdiff |
| 2007-04-26 |
jprocter | score and visible copy construction |
tree | commitdiff |
| 2007-04-26 |
jprocter | fix for null annotations |
tree | commitdiff |
| 2007-04-26 |
amwaterhouse | remove should be removeElement |
tree | commitdiff |
| 2007-04-25 |
jprocter | moving word methods to MapList and begin bug-fix for... |
tree | commitdiff |
| 2007-04-25 |
amwaterhouse | alignmentProperties added |
tree | commitdiff |
| 2007-04-25 |
jprocter | AlignmentAnnotation: added annotation score attribute... |
tree | commitdiff |
| 2007-04-24 |
jprocter | bugfix for sequence features mapped to multiple contigs... |
tree | commitdiff |
| 2007-04-24 |
jprocter | updated mapping for EMBL_Services_V1.1.xsd and tested... |
tree | commitdiff |
| 2007-04-23 |
amwaterhouse | Check for null displayCharacters |
tree | commitdiff |
| 2007-04-23 |
amwaterhouse | Colour is null |
tree | commitdiff |
| 2007-04-23 |
amwaterhouse | remove seqref annotations |
tree | commitdiff |
| 2007-04-23 |
amwaterhouse | remove alignmentAnnotation added |
tree | commitdiff |
| 2007-04-20 |
jprocter | fix null annotation values |
tree | commitdiff |
| 2007-04-20 |
jprocter | value only annotation |
tree | commitdiff |
| 2007-04-19 |
jprocter | bugfix |
tree | commitdiff |
| 2007-04-19 |
jprocter | sequence associated alignment annotation copy for colum... |
tree | commitdiff |
| 2007-04-19 |
jprocter | padGaps flag in copy constructor |
tree | commitdiff |
| 2007-04-19 |
jprocter | javadoc note on padding AlignmentAnnotation to alignmen... |
tree | commitdiff |
| 2007-04-19 |
jprocter | copying sequenceMapping, restrict(alstart/end) and... |
tree | commitdiff |
| 2007-04-18 |
amwaterhouse | Validate range for all annotations |
tree | commitdiff |
| 2007-04-18 |
amwaterhouse | Pad gaps when annotation editing |
tree | commitdiff |
| 2007-04-18 |
amwaterhouse | Check values not null in copy constructor |
tree | commitdiff |
| 2007-04-18 |
jprocter | java 1.1 compliance |
tree | commitdiff |
| 2007-04-17 |
jprocter | ascii type |
tree | commitdiff |
| 2007-04-17 |
jprocter | copy constructors and AlignmentAnnotation sequenceRef... |
tree | commitdiff |
| 2007-04-17 |
jprocter | copy constructor and ascii type change. |
tree | commitdiff |
| 2007-04-12 |
jprocter | basic support for multi-exon CDS features |
tree | commitdiff |
| 2007-04-11 |
amwaterhouse | If hiddenColumns are null, then column is viisble |
tree | commitdiff |
| 2007-04-02 |
amwaterhouse | Destroy alignment moved to finalize |
tree | commitdiff |
| 2007-04-02 |
amwaterhouse | Destroy aligment method added |
tree | commitdiff |
| 2007-03-23 |
jprocter | generalised feature attribute parsing slightly (no... |
tree | commitdiff |
| 2007-03-23 |
jprocter | bugfix for 1.1 conversion. |
tree | commitdiff |
| 2007-03-19 |
jprocter | initial support for EMBL file parsing. |
tree | commitdiff |
| 2007-03-19 |
jprocter | equals operation used for canonicalisation of DBRefList... |
tree | commitdiff |
| 2007-03-19 |
jprocter | mapping implemented by MapList added to DBRefEntry. |
tree | commitdiff |
| 2007-03-19 |
jprocter | javadoc typo |
tree | commitdiff |
| 2007-03-19 |
jprocter | copy constructor |
tree | commitdiff |
| 2007-02-07 |
amwaterhouse | Formatting |
tree | commitdiff |
| 2007-01-31 |
amwaterhouse | Unique name for new group and treegroup |
tree | commitdiff |
| 2007-01-31 |
amwaterhouse | make new dataset seq if residues deleted |
tree | commitdiff |
| 2007-01-31 |
amwaterhouse | copy feature: check for null values |
tree | commitdiff |
| 2007-01-30 |
amwaterhouse | Check valid residues in ss |
tree | commitdiff |
| 2007-01-29 |
amwaterhouse | Description added |
tree | commitdiff |
| 2007-01-26 |
amwaterhouse | AnnotationId is hashcode of object |
tree | commitdiff |
| 2007-01-26 |
amwaterhouse | Only set the sequence oncecvs diff datamodel/Alignment... |
tree | commitdiff |
| 2007-01-25 |
amwaterhouse | Annotation adjustment moved to EditCommand |
tree | commitdiff |
| 2007-01-24 |
amwaterhouse | AdjustAnnotations needs position, number and insert |
tree | commitdiff |
| 2007-01-23 |
amwaterhouse | Hidden representatives moved from sequence to viewport |
tree | commitdiff |
| 2007-01-19 |
jprocter | datasetSequence derive method and some checks |
tree | commitdiff |
| 2007-01-19 |
jprocter | javadoc |
tree | commitdiff |
| 2007-01-19 |
jprocter | added sequence feature copy constructor. |
tree | commitdiff |
| 2007-01-18 |
amwaterhouse | Set description on copy |
tree | commitdiff |
| 2007-01-18 |
amwaterhouse | Is secondary structure label modified |
tree | commitdiff |
| 2006-12-21 |
amwaterhouse | check on sequence length |
tree | commitdiff |
| 2006-12-21 |
amwaterhouse | getSequenceAsString |
tree | commitdiff |
| 2006-12-21 |
amwaterhouse | getSequenceAsString |
tree | commitdiff |
| 2006-12-21 |
amwaterhouse | remove unnecessary import |
tree | commitdiff |
| 2006-12-21 |
jprocter | type change |
tree | commitdiff |
| 2006-12-14 |
amwaterhouse | Watch out for - symbol lin jnet files |
tree | commitdiff |
| 2006-12-14 |
amwaterhouse | Are the labels all secondary Strutures? are the display... |
tree | commitdiff |
| 2006-12-07 |
amwaterhouse | dont add char[] ref to a string |
tree | commitdiff |
| 2006-12-06 |
jprocter | general pairwise substitution score models for pairwise... |
tree | commitdiff |
| 2006-12-05 |
amwaterhouse | Sequence is char [] |
tree | commitdiff |
| 2006-11-24 |
amwaterhouse | Fix load 1 col hidden bug |
tree | commitdiff |
| 2006-11-23 |
amwaterhouse | Dont make groups of hidden sequences |
tree | commitdiff |
| 2006-11-20 |
amwaterhouse | warning message changed |
tree | commitdiff |
| 2006-11-20 |
amwaterhouse | Must copy old dbrefs |
tree | commitdiff |
| 2006-11-13 |
amwaterhouse | Dont readd identical DBRef |
tree | commitdiff |
| 2006-11-13 |
amwaterhouse | Sequence colour moved to viewport |
tree | commitdiff |
| 2006-11-13 |
amwaterhouse | Text colour for group |
tree | commitdiff |
| 2006-11-08 |
amwaterhouse | Set description |
tree | commitdiff |
| 2006-11-08 |
amwaterhouse | currentSeq and set description in dataset |
tree | commitdiff |
| 2006-11-06 |
amwaterhouse | Only calculate consenus from start to end |
tree | commitdiff |
| 2006-11-03 |
amwaterhouse | Consensus may already have been removed |
tree | commitdiff |
| 2006-10-30 |
amwaterhouse | deleteSequenceFeature |
tree | commitdiff |
| 2006-10-27 |
amwaterhouse | If sequence is null, dont add it |
tree | commitdiff |
| 2006-10-27 |
amwaterhouse | New padgaps works out number of gaps to insert, delete |
tree | commitdiff |
| 2006-10-26 |
amwaterhouse | No need to reduce length if inserting more gaps at... |
tree | commitdiff |
| 2006-10-26 |
amwaterhouse | Check if hiddenSequence has been deleted |
tree | commitdiff |
| 2006-10-25 |
amwaterhouse | We can delete sequence 0 |
tree | commitdiff |
| 2006-10-25 |
amwaterhouse | Check hiddenSequence before placing in tmp |
tree | commitdiff |
| 2006-10-25 |
amwaterhouse | Adjusts hiddenColumns correctly |
tree | commitdiff |
| 2006-10-24 |
amwaterhouse | changeCase, removeGaps moved to commands package |
tree | commitdiff |
| 2006-10-24 |
amwaterhouse | maxIdLength redundant, deleteCols, trimLeft, removeGaps... |
tree | commitdiff |
| 2006-10-24 |
amwaterhouse | Its historycvs remove jalview/datamodel/HistoryItem... |
tree | commitdiff |
| 2006-10-15 |
jprocter | fixed array out of bounds exception in copy constructor |
tree | commitdiff |
| 2006-10-12 |
amwaterhouse | Convenient function findEndRes |
tree | commitdiff |
| 2006-10-12 |
amwaterhouse | Overview may request index beyond alignment height |
tree | commitdiff |
| 2006-10-12 |
amwaterhouse | HiddenSequences now array, not hashtable |
tree | commitdiff |
| 2006-10-10 |
amwaterhouse | Remove growing hashtable |
tree | commitdiff |
| 2006-10-10 |
amwaterhouse | 1.1 compatible |
tree | commitdiff |
| next |
git://source.jalview.org / jalview.git / history