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JAL-2759 Rationalising hidden cols cursor, and sorting out coverage
[jalview.git]
/
src
/
jalview
/
datamodel
/
2018-01-30
kiramt
JAL-2759 Rationalising hidden cols cursor, and sorting...
tree
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commitdiff
2018-01-30
kiramt
JAL-2759 comment
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commitdiff
2018-01-30
kiramt
JAL-2759 Additional tests and tweaks to numColumns...
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commitdiff
2018-01-30
kiramt
JAL-2759 Keep numColumns up to date
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commitdiff
2018-01-29
kiramt
JAL-2759 Combine findRegionForColumn code in HiddenColu...
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commitdiff
2018-01-29
kiramt
JAL-2759 numColumns reset
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commitdiff
2018-01-29
kiramt
JAL-2759 remove redundant hiddenColumns.clear()
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commitdiff
2018-01-29
kiramt
JAL-2759 Tidy
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commitdiff
2018-01-29
kiramt
JAL-2759 make a new cursor instead of resetting, update...
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commitdiff
2018-01-29
kiramt
JAL-2759 Fix unintended type change
tree
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commitdiff
2018-01-22
kiramt
JAL-2579 Moved locateVisibleStartOfSequence to Sequence...
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commitdiff
2018-01-22
kiramt
JAL-2759 Various minor HiddenColumns updates after...
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commitdiff
2018-01-19
kiramt
JAL-2759 Changes to getVisibleSequenceStrings after...
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commitdiff
2018-01-19
kiramt
JAL-2759 Moved propagateInsertions out of HiddenColumns
tree
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commitdiff
2018-01-19
kiramt
JAL-2759 Update to getVisibleStartAndEndIndex after...
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commitdiff
2018-01-18
kiramt
JAL-2759 change subtractVisibleColumns and removal...
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commitdiff
2018-01-18
kiramt
JAL-2759 Updated test
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commitdiff
2018-01-18
kiramt
JAL-2759 unit tests (incomplete)
tree
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commitdiff
2018-01-16
kiramt
JAL-2759 setup hideBitSet over range for hideInsertions
tree
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commitdiff
2018-01-16
kiramt
JAL-2759 Moved alignment annotation code out of HiddenC...
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commitdiff
2018-01-16
kiramt
JAL-2759 Replaced StringBuffer with StringBuilder;...
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commitdiff
2018-01-15
kiramt
JAL-2759 More compact iterator usage; after review
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 First pass instantiate hiddenColumns collectio...
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commitdiff
2018-01-15
kiramt
JAL-2759 getVisContigsIterator returns VisibleContigsIt...
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commitdiff
2018-01-15
kiramt
JAL-2759 Rename hideInsertionsFor to hideList, after...
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commitdiff
2018-01-15
kiramt
JAL-2759 Refactor of hideInsertionsFor after review
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Simplified HiddenColumns constructor after...
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commitdiff
2018-01-15
kiramt
JAL-2759 Changed VisibleColsCollection constructor...
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commitdiff
2018-01-15
kiramt
JAL-2759 Minor doc and naming changes
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Updated absoluteToVisibleColumn doc (prev...
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commitdiff
2018-01-15
kiramt
JAL-2759 Rename findColumnPosition and adjustForHiddenC...
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commitdiff
2018-01-15
kiramt
JAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol...
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commitdiff
2018-01-15
kiramt
JAL-2759 Comments and renaming for has(Many)HiddenColum...
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commitdiff
2018-01-15
kiramt
JAL-2759 Tidy up javadoc and naming in HiddenColumnsCur...
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commitdiff
2018-01-15
kiramt
JAL-2759 Update to getHiddenBoundaryRight + unit test...
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commitdiff
2018-01-15
kiramt
JAL-2759 Updates following review
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 code tidy
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 performance improvements to hideColumns
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 performance tweaks
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 HiddenColumns test polishing
tree
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commitdiff
2017-11-21
kiramt
JAL-2759 corrected old getVisibleBlocksIterator calls...
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commitdiff
2017-11-21
kiramt
JAL-2759 Remove getVisibleBlocksIterator call
tree
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commitdiff
2017-11-21
kiramt
Merge branch 'develop' into feature/JAL-2759
tree
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commitdiff
2017-11-21
kiramt
JAL-2759 unit tests for VisibleContigsIterator
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 cursor option for BoundedStartRegionIterator
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 rationalise visible contigs iteration
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commitdiff
2017-11-20
kiramt
JAL-2759 improvements to speed up synchronisation;...
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commitdiff
2017-11-17
kiramt
JAL-2759 Move isVisible to use cursor
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commitdiff
2017-11-17
kiramt
JAL-2759 tidy
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 Update tests
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 Convert reveal to use cursor
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 HiddenColumnsCursor tests
tree
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commitdiff
2017-11-16
Jim Procter
Merge branch 'bug/JAL-2829deleteCharsWithGaps' into...
tree
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commitdiff
2017-11-13
gmungoc
JAL-2176 removed unused Sequence.index
tree
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commitdiff
2017-11-13
kiramt
JAL-2759 convert findColumnPosition to use cursor
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commitdiff
2017-11-13
kiramt
JAL-2759 Converted getHiddenBoundaryLeft/Right to use...
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commitdiff
2017-11-10
gmungoc
JAL-2829 fixes and unit tests
bug/JAL-2829deleteCharsWithGaps
tree
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commitdiff
2017-11-10
gmungoc
JAL-2562 updated findPosition javadoc to match behaviour
tree
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commitdiff
2017-11-09
kiramt
JAL-2759 make bounds correct for left scrolling with...
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commitdiff
2017-11-08
kiramt
Merge branch 'develop' into feature/JAL-2759
tree
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commitdiff
2017-11-06
kiramt
JAL-2759 fix getHiddenOffset iterating backwards
tree
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commitdiff
2017-10-26
Jim Procter
Merge branch 'feature/JAL-2488finalize' into develop
tree
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commitdiff
2017-10-23
Jim Procter
Merge branch 'bug/JAL-2682parseId' into develop
tree
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commitdiff
2017-10-13
kiramt
JAL-2759 hiddenColumns null check
tree
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commitdiff
2017-10-12
kiramt
JAL-2759 working first pass cursor
tree
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commitdiff
2017-10-11
gmungoc
JAL-2772 check array bounds for sequence access
bug/JAL-2772pdbArrayBounds
tree
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commitdiff
2017-10-11
gmungoc
Merge branch 'bug/JAL-2742' into develop
tree
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commitdiff
2017-10-10
kiramt
JAL-2759 Rearranged iterators
tree
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commitdiff
2017-10-09
gmungoc
JAL-2480 use interface type for sequenceFeatureStore
tree
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commitdiff
2017-10-09
kiramt
JAL-2674 iterator updates
tree
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commitdiff
2017-10-06
kiramt
JAL-2674 Last moves to iterators
tree
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commitdiff
2017-10-06
kiramt
JAL-2647 stashing
tree
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commitdiff
2017-10-05
kiramt
JAL-2674 Removed a stray Vector
tree
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commitdiff
2017-10-05
kiramt
JAL-2674 Rationalising iterators and retesting
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 Adjustments to hideColumns
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 more adjustments to locateVisibleBoundsOfSequence
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 Simplify locateVisibleBoundsOfSequence
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 tidy
tree
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commitdiff
2017-10-03
kiramt
JAL-2674 testing
tree
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commitdiff
2017-10-03
kiramt
JAL-2674 working refactor of drawPanel iteration
tree
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commitdiff
2017-10-03
kiramt
JAL-2674 2nd attempt to refactor seqcanvas drawing...
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commitdiff
2017-10-02
kiramt
JAL-2674 iterator for visible blocks with absolute...
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commitdiff
2017-09-29
kiramt
JAL-2674 Tidies
tree
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commitdiff
2017-09-29
kiramt
JAL-2674 finish with iterators for now
tree
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commitdiff
2017-09-29
kiramt
JAL=2674 Removed getHiddenColumnsCopy
tree
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commitdiff
2017-09-29
kiramt
JAL-2674 reverted attempt at visible regions iterator
tree
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commitdiff
2017-09-28
kiramt
JAL-2647 more iterators
tree
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commitdiff
2017-09-27
kiramt
JAL-2674 Removing most calls to getHiddenColumnsCopy
tree
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commitdiff
2017-09-26
kiramt
JAL-2674 tidied up CigarArray
tree
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commitdiff
2017-09-26
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2742'...
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commitdiff
2017-09-26
kiramt
JAL-2742 fixed
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commitdiff
2017-09-26
kiramt
JAL-2674 Changed CigarArray constructor to use HiddenCo...
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commitdiff
2017-09-26
kiramt
JAL-2674 Changes to pasting
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commitdiff
2017-09-26
kiramt
JAL-2674 HiddenColumns interface tidies
tree
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commitdiff
2017-09-26
kiramt
JAL-2647 Added iterators and associated tests and bench...
tree
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commitdiff
2017-09-25
gmungoc
JAL-2525 return no features if none matches ontology...
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commitdiff
2017-09-22
kiramt
JAL-2674 add bounds to findHiddenRegionPositions
tree
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commitdiff
2017-09-21
kiramt
JAL-2674 Rewrote propagateInsertions
tree
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commitdiff
2017-09-20
kiramt
JAL-2674 fix up interface of locateVisibleBoundsOfSequence
tree
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commitdiff
2017-09-05
Jim Procter
Merge branch 'master' into portforward/JAL-2675_2102b1t...
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commitdiff
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