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JAL-2759 Moved alignment annotation code out of HiddenColumns
[jalview.git] / src / jalview / datamodel /
2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenC... tree | commitdiff
2018-01-16 kiramtJAL-2759 Replaced StringBuffer with StringBuilder;... tree | commitdiff
2018-01-15 kiramtJAL-2759 More compact iterator usage; after review tree | commitdiff
2018-01-15 kiramtJAL-2759 First pass instantiate hiddenColumns collectio... tree | commitdiff
2018-01-15 kiramtJAL-2759 getVisContigsIterator returns VisibleContigsIt... tree | commitdiff
2018-01-15 kiramtJAL-2759 Rename hideInsertionsFor to hideList, after... tree | commitdiff
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review tree | commitdiff
2018-01-15 kiramtJAL-2759 Simplified HiddenColumns constructor after... tree | commitdiff
2018-01-15 kiramtJAL-2759 Changed VisibleColsCollection constructor... tree | commitdiff
2018-01-15 kiramtJAL-2759 Minor doc and naming changes tree | commitdiff
2018-01-15 kiramtJAL-2759 Updated absoluteToVisibleColumn doc (prev... tree | commitdiff
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC... tree | commitdiff
2018-01-15 kiramtJAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol... tree | commitdiff
2018-01-15 kiramtJAL-2759 Comments and renaming for has(Many)HiddenColum... tree | commitdiff
2018-01-15 kiramtJAL-2759 Tidy up javadoc and naming in HiddenColumnsCur... tree | commitdiff
2018-01-15 kiramtJAL-2759 Update to getHiddenBoundaryRight + unit test... tree | commitdiff
2018-01-15 kiramtJAL-2759 Updates following review tree | commitdiff
2017-11-22 kiramtJAL-2759 code tidy tree | commitdiff
2017-11-22 kiramtJAL-2759 performance improvements to hideColumns tree | commitdiff
2017-11-22 kiramtJAL-2759 performance tweaks tree | commitdiff
2017-11-22 kiramtJAL-2759 HiddenColumns test polishing tree | commitdiff
2017-11-21 kiramtJAL-2759 corrected old getVisibleBlocksIterator calls... tree | commitdiff
2017-11-21 kiramtJAL-2759 Remove getVisibleBlocksIterator call tree | commitdiff
2017-11-21 kiramtMerge branch 'develop' into feature/JAL-2759 tree | commitdiff
2017-11-21 kiramtJAL-2759 unit tests for VisibleContigsIterator tree | commitdiff
2017-11-20 kiramtJAL-2759 cursor option for BoundedStartRegionIterator tree | commitdiff
2017-11-20 kiramtJAL-2759 rationalise visible contigs iteration tree | commitdiff
2017-11-20 kiramtJAL-2759 improvements to speed up synchronisation;... tree | commitdiff
2017-11-17 kiramtJAL-2759 Move isVisible to use cursor tree | commitdiff
2017-11-17 kiramtJAL-2759 tidy tree | commitdiff
2017-11-17 kiramtJAL-2759 Update tests tree | commitdiff
2017-11-17 kiramtJAL-2759 Convert reveal to use cursor tree | commitdiff
2017-11-17 kiramtJAL-2759 HiddenColumnsCursor tests tree | commitdiff
2017-11-16 Jim ProcterMerge branch 'bug/JAL-2829deleteCharsWithGaps' into... tree | commitdiff
2017-11-13 gmungocJAL-2176 removed unused Sequence.index tree | commitdiff
2017-11-13 kiramtJAL-2759 convert findColumnPosition to use cursor tree | commitdiff
2017-11-13 kiramtJAL-2759 Converted getHiddenBoundaryLeft/Right to use... tree | commitdiff
2017-11-10 gmungocJAL-2829 fixes and unit tests bug/JAL-2829deleteCharsWithGaps tree | commitdiff
2017-11-10 gmungocJAL-2562 updated findPosition javadoc to match behaviour tree | commitdiff
2017-11-09 kiramtJAL-2759 make bounds correct for left scrolling with... tree | commitdiff
2017-11-08 kiramtMerge branch 'develop' into feature/JAL-2759 tree | commitdiff
2017-11-06 kiramtJAL-2759 fix getHiddenOffset iterating backwards tree | commitdiff
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop tree | commitdiff
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2682parseId' into develop tree | commitdiff
2017-10-13 kiramtJAL-2759 hiddenColumns null check tree | commitdiff
2017-10-12 kiramtJAL-2759 working first pass cursor tree | commitdiff
2017-10-11 gmungocJAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds tree | commitdiff
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop tree | commitdiff
2017-10-10 kiramtJAL-2759 Rearranged iterators tree | commitdiff
2017-10-09 gmungocJAL-2480 use interface type for sequenceFeatureStore tree | commitdiff
2017-10-09 kiramtJAL-2674 iterator updates tree | commitdiff
2017-10-06 kiramtJAL-2674 Last moves to iterators tree | commitdiff
2017-10-06 kiramtJAL-2647 stashing tree | commitdiff
2017-10-05 kiramtJAL-2674 Removed a stray Vector tree | commitdiff
2017-10-05 kiramtJAL-2674 Rationalising iterators and retesting tree | commitdiff
2017-10-04 kiramtJAL-2674 Adjustments to hideColumns tree | commitdiff
2017-10-04 kiramtJAL-2674 more adjustments to locateVisibleBoundsOfSequence tree | commitdiff
2017-10-04 kiramtJAL-2674 Simplify locateVisibleBoundsOfSequence tree | commitdiff
2017-10-04 kiramtJAL-2674 tidy tree | commitdiff
2017-10-03 kiramtJAL-2674 testing tree | commitdiff
2017-10-03 kiramtJAL-2674 working refactor of drawPanel iteration tree | commitdiff
2017-10-03 kiramtJAL-2674 2nd attempt to refactor seqcanvas drawing... tree | commitdiff
2017-10-02 kiramtJAL-2674 iterator for visible blocks with absolute... tree | commitdiff
2017-09-29 kiramtJAL-2674 Tidies tree | commitdiff
2017-09-29 kiramtJAL-2674 finish with iterators for now tree | commitdiff
2017-09-29 kiramtJAL=2674 Removed getHiddenColumnsCopy tree | commitdiff
2017-09-29 kiramtJAL-2674 reverted attempt at visible regions iterator tree | commitdiff
2017-09-28 kiramtJAL-2647 more iterators tree | commitdiff
2017-09-27 kiramtJAL-2674 Removing most calls to getHiddenColumnsCopy tree | commitdiff
2017-09-26 kiramtJAL-2674 tidied up CigarArray tree | commitdiff
2017-09-26 kiramtMerge remote-tracking branch 'origin/bug/JAL-2742'... tree | commitdiff
2017-09-26 kiramtJAL-2742 fixed tree | commitdiff
2017-09-26 kiramtJAL-2674 Changed CigarArray constructor to use HiddenCo... tree | commitdiff
2017-09-26 kiramtJAL-2674 Changes to pasting tree | commitdiff
2017-09-26 kiramtJAL-2674 HiddenColumns interface tidies tree | commitdiff
2017-09-26 kiramtJAL-2647 Added iterators and associated tests and bench... tree | commitdiff
2017-09-25 gmungocJAL-2525 return no features if none matches ontology... tree | commitdiff
2017-09-22 kiramtJAL-2674 add bounds to findHiddenRegionPositions tree | commitdiff
2017-09-21 kiramtJAL-2674 Rewrote propagateInsertions tree | commitdiff
2017-09-20 kiramtJAL-2674 fix up interface of locateVisibleBoundsOfSequence tree | commitdiff
2017-09-05 Jim ProcterMerge branch 'master' into portforward/JAL-2675_2102b1t... tree | commitdiff
2017-09-04 Jim ProcterJAL-2675 source license tree | commitdiff
2017-09-03 Jim ProcterMerge branch 'bug/JAL-2665-2.10.2b' into documentation... bug/JAL-2673_mergewithproblem tree | commitdiff
2017-09-03 Jim ProcterMerge branch 'documentation/JAL-2675_release2102b1... tree | commitdiff
2017-09-03 Jim ProcterMerge branch 'feature/JAL-2527' into documentation... tree | commitdiff
2017-09-01 gmungocJAL-2488 remove finalize methods tree | commitdiff
2017-08-30 kiramtMerge branch 'feature/JAL-2664' into feature/JAL-2527 tree | commitdiff
2017-08-29 kiramtJAL-2664 Updates following review feature/JAL-2664 tree | commitdiff
2017-08-28 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-08-28 kiramtMerge remote-tracking branch 'origin/releases/Release_2... tree | commitdiff
2017-08-28 kiramtJAL-2665 Changes for review comments; printing with... bug/JAL-2665 tree | commitdiff
2017-08-23 gmungocJAL-2682 non-regex sequence id parsing, and tests added tree | commitdiff
2017-08-22 Jim ProcterJAL-1551 formatting tree | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-08-16 kiramtJAL-2665 Added hidden columns group selection - almost... tree | commitdiff
2017-08-16 kiramtJAL-2665 Added sequence group update event. tree | commitdiff
2017-08-09 gmungocJAL-2480 inline one method, improve comments tree | commitdiff
2017-08-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-07-22 kiramtMerge branch 'develop' into feature/JAL-2611 tree | commitdiff
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