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JAL-2808 capture feature attributes datatype (Character/Number/Mixed) for more intell...
[jalview.git] / src / jalview / datamodel /
2017-11-22 gmungocJAL-2808 capture feature attributes datatype (Character... tree | commitdiff
2017-11-15 gmungocJAL-2835 support filter/colour by nested attribute... tree | commitdiff
2017-11-13 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-11-13 gmungocJAL-2176 removed unused Sequence.index tree | commitdiff
2017-11-07 gmungocJAL-2069 add 'by attribute' options to graduated featur... tree | commitdiff
2017-11-03 gmungocJAL-2808 JAL-2069 record feature attributes description... tree | commitdiff
2017-11-02 gmungocJAL-2808 new Filters tab in Feature Settings tree | commitdiff
2017-11-02 gmungocJAL-2808 convenience method to get attribute as String tree | commitdiff
2017-10-30 gmungocJAL-2792 Javadoc updates tree | commitdiff
2017-10-30 gmungocJAL-2808 remember attribute keys by feature type tree | commitdiff
2017-10-27 gmungocJAL-2792 include source in copy constructor; null point... tree | commitdiff
2017-10-27 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-10-27 gmungocJAL-2792 capture feature metadata and render in Feature... tree | commitdiff
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop tree | commitdiff
2017-10-26 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-10-26 gmungocJAL-2792 html table for Feature Details report tree | commitdiff
2017-10-24 gmungocJAL-2738 tidy Javadoc, remove debug logging tree | commitdiff
2017-10-24 gmungocMerge branch 'develop' into features/JAL-1793VCF; lambd... tree | commitdiff
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2682parseId' into develop tree | commitdiff
2017-10-19 gmungocJAL-2755 add missing Javadoc tree | commitdiff
2017-10-11 gmungocJAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds tree | commitdiff
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop tree | commitdiff
2017-10-10 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-10-09 gmungocJAL-2480 use interface type for sequenceFeatureStore tree | commitdiff
2017-10-05 gmungocJAL-2744 add score to feature details report, descripti... tree | commitdiff
2017-09-29 gmungocJAL-2744 indent CSQ lines to catch the eye tree | commitdiff
2017-09-28 gmungocJAL-1796 GeneLociI as distinguished DBRefEntry tree | commitdiff
2017-09-28 gmungocJAL-2744 simple Feature Details report from Popup menu tree | commitdiff
2017-09-26 kiramtJAL-2742 fixed tree | commitdiff
2017-09-26 gmungocJAL-2738 promote setGeneLoci to SequenceI! tree | commitdiff
2017-09-25 gmungocJAL-2738 getGeneLoci promoted to SequenceI tree | commitdiff
2017-09-25 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-09-25 gmungocJAL-2525 return no features if none matches ontology... tree | commitdiff
2017-09-22 gmungocJAL-2738 correct handling of reverse strand genes tree | commitdiff
2017-09-21 gmungocJAL-2738 GeneLoci holds mapping of sequence to chromosome tree | commitdiff
2017-09-05 Jim ProcterMerge branch 'master' into portforward/JAL-2675_2102b1t... tree | commitdiff
2017-09-04 Jim ProcterJAL-2675 source license tree | commitdiff
2017-09-03 Jim ProcterMerge branch 'bug/JAL-2665-2.10.2b' into documentation... bug/JAL-2673_mergewithproblem tree | commitdiff
2017-09-03 Jim ProcterMerge branch 'documentation/JAL-2675_release2102b1... tree | commitdiff
2017-09-03 Jim ProcterMerge branch 'feature/JAL-2527' into documentation... tree | commitdiff
2017-09-01 gmungocJAL-2488 remove finalize methods tree | commitdiff
2017-08-30 kiramtMerge branch 'feature/JAL-2664' into feature/JAL-2527 tree | commitdiff
2017-08-29 kiramtJAL-2664 Updates following review feature/JAL-2664 tree | commitdiff
2017-08-28 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-08-28 kiramtMerge remote-tracking branch 'origin/releases/Release_2... tree | commitdiff
2017-08-28 kiramtJAL-2665 Changes for review comments; printing with... bug/JAL-2665 tree | commitdiff
2017-08-23 gmungocJAL-2682 non-regex sequence id parsing, and tests added tree | commitdiff
2017-08-22 Jim ProcterJAL-1551 formatting tree | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-08-16 kiramtJAL-2665 Added hidden columns group selection - almost... tree | commitdiff
2017-08-16 kiramtJAL-2665 Added sequence group update event. tree | commitdiff
2017-08-09 gmungocJAL-2480 inline one method, improve comments tree | commitdiff
2017-08-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-07-22 kiramtMerge branch 'develop' into feature/JAL-2611 tree | commitdiff
2017-07-19 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-07-13 kiramtJAL-2613 Unit tests and a fix. Phew. tree | commitdiff
2017-07-05 gmungocJAL-147 additions to unit test, check for negative... tree | commitdiff
2017-07-05 gmungocJAL-147 prevent overview box move up over hidden first... tree | commitdiff
2017-06-30 gmungocJAL-2505 correct handling of change of feature type tree | commitdiff
2017-06-30 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-29 kiramtJAL-2597 Fix and unit test bug/JAL-2597 tree | commitdiff
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-24 gmungocJAL-2547 fix case of gap followed by enclosing contact... tree | commitdiff
2017-06-23 gmungocJAL-1858 handle hidden columns when computing region... tree | commitdiff
2017-06-22 gmungocJAL-2481 JAL-2593 JAL-2526 further optimisation of... tree | commitdiff
2017-06-22 gmungocJAL-2480 simpler and safer test to avoid adding duplicates tree | commitdiff
2017-06-21 gmungocJAL-2480 tidy generic initialisations, SequenceFeatures... tree | commitdiff
2017-06-20 gmungocJAL-2526 don't retain lastColumnPosition from an invali... tree | commitdiff
2017-06-15 gmungocMerge branch 'bug/JAL-2386groupConservationColouring... tree | commitdiff
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the... tree | commitdiff
2017-06-12 kiramtJAL-2591 Updates following code review tree | commitdiff
2017-06-09 gmungocJAL-2480 tidy javadoc tree | commitdiff
2017-06-08 gmungocJAL-2526 correct boundary conditions for sequence left... tree | commitdiff
2017-06-08 gmungocJAL-2386 JAL-2570 use ResidueShader copy constructor... bug/JAL-2386groupConservationColouring tree | commitdiff
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea... tree | commitdiff
2017-06-08 kiramtJAL-2591 More HiddenColumns refactoring. Tests passing. tree | commitdiff
2017-06-08 gmungocJAL-2526 cache first/last residue column positions... tree | commitdiff
2017-06-08 gmungocJAL-2526 reuse findIndex result if start==end tree | commitdiff
2017-06-07 kiramtJAL-2591 Further refactoring (still incomplete) tree | commitdiff
2017-06-07 kiramtJAL-2591 More refactoring (incomplete) tree | commitdiff
2017-06-07 kiramtJAL-2591 Hidden columns regions can be output to string... tree | commitdiff
2017-06-07 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-07 kiramtJAL-2591 updated HiddenColumns::findHiddenRegionPositio... tree | commitdiff
2017-06-07 gmungocJAL-2386 ensure group conservation shading is applied... tree | commitdiff
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage tree | commitdiff
2017-06-06 kiramtJAL-2591 Added readwrite locking on HiddenColumns tree | commitdiff
2017-06-06 gmungocJAL-2526 less stringent test for invalid cursor tree | commitdiff
2017-06-06 kiramtMerge remote-tracking branch 'origin/bug/JAL-2576'... tree | commitdiff
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2576' into develop tree | commitdiff
2017-06-05 gmungocJAL-2505 comments updated tree | commitdiff
2017-06-05 gmungocJAL-2480 remove redundant method, further test coverage tree | commitdiff
2017-06-05 gmungocJAL-2505 explicit (and final) contactFeature property tree | commitdiff
2017-06-05 gmungocMerge branch 'features/JAL-2526sequenceCursor' into tree | commitdiff
2017-06-05 gmungocMerge branch 'features/JAL-2446NCList' into tree | commitdiff
2017-06-05 gmungocMerge branch 'features/JAL-2446NCList' into features/JAL-2526sequenceCursor tree | commitdiff
2017-06-05 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 get bitset representing hidden columns tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 method taking a BitSet for hiding columns tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 bug fix - BitSet.set is [start,end+1) tree | commitdiff
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