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JAL-958 store/recover normalised flag
[jalview.git] / src / jalview / datamodel /
2008-07-18 jprocterallow findSeq to begin *after* a given sequence in... tree | commitdiff
2008-07-18 jprocterSequence label colour stored for each sequence group tree | commitdiff
2008-06-23 jprocterlocal sequence properties are preserved in SeqCigar... tree | commitdiff
2008-05-01 jprocterfix for unicode char labels causing arrayOutOfBoundsExc... tree | commitdiff
2008-02-22 jprocterCDS segment index tree | commitdiff
2008-02-22 jprocterpossible fix for stockhom ss-annotation re-creation... tree | commitdiff
2008-02-22 jprocterindex number for contiguous part of mapped sequence... tree | commitdiff
2008-02-22 jprocterjavadoc tree | commitdiff
2008-01-22 jprocternew method to get map of sequence positions correspondi... tree | commitdiff
2007-12-21 jproctersequence db fetcher metadata for multiple sequence... tree | commitdiff
2007-12-21 jproctertemporary bugfix ? tree | commitdiff
2007-12-21 jprocterbugfix tree | commitdiff
2007-12-21 jprocterequivalence for transferring/updating references tree | commitdiff
2007-11-30 jprocternull pointer bugfix tree | commitdiff
2007-11-30 jprocterjavadoc and transferAnnotation method tree | commitdiff
2007-11-30 jproctercase insensitive matching of database ids tree | commitdiff
2007-11-30 jproctercase invariant matching of seqeunce feature to sequence... tree | commitdiff
2007-11-16 jprocterjavadoc tree | commitdiff
2007-11-08 jprocterend must be greater than blockstart tree | commitdiff
2007-10-31 jprocterjavadoc tree | commitdiff
2007-10-31 jprocterfix parsing of embl entries like S75919 which have... tree | commitdiff
2007-10-24 jprocterensure PDB ids are updated on the dataset sequence tree | commitdiff
2007-10-04 jprocterrefactored invertColumnSelection as an object method tree | commitdiff
2007-10-02 jprocterconvenience constructor for duplicating an annotation... tree | commitdiff
2007-10-02 jprocterjavadoc and operator for editing AlignmentAnnotation... tree | commitdiff
2007-10-02 jprocterjavadoc tree | commitdiff
2007-09-29 jprocterupdatePDBEntry method to add any PDBEntry from the... tree | commitdiff
2007-09-29 jprocterfriendlier sequence names for protein products tree | commitdiff
2007-09-06 jprocterargs for emblfile parser main method tree | commitdiff
2007-08-30 jproctermoved dataset sequence creation onto sequence method tree | commitdiff
2007-08-30 jproctercreate dataset sequence method tree | commitdiff
2007-08-30 jprocterremoved autogenerated todo tree | commitdiff
2007-08-24 jprocterdataset alignments have a reference count which must... tree | commitdiff
2007-08-24 jproctertodo comments tree | commitdiff
2007-08-22 jprocteradded failsafe fix for cases where null sequence names... tree | commitdiff
2007-07-31 jprocterdebugging cross references and duplicate sequence db... tree | commitdiff
2007-07-30 jprocterjavadoc tree | commitdiff
2007-07-25 jprocteruniprot synonym tree | commitdiff
2007-07-13 jproctermore semantic groupings of dbs tree | commitdiff
2007-07-13 jprocterdebugged mappings and translated sequence recovery tree | commitdiff
2007-07-13 jprocterpreliminary states for pca distribution io tree | commitdiff
2007-07-13 jprocterpreliminary methods for detecting internal sequence... tree | commitdiff
2007-07-13 jprocterbugfix tree | commitdiff
2007-07-13 jproctermapping bug fixes tree | commitdiff
2007-07-13 jprocterbasic idea for recognising that a feature is a coding... tree | commitdiff
2007-06-17 jprocterAlignedCodonFrame holds mapping information between... tree | commitdiff
2007-06-17 jproctersearchresult highlighting on common dataset or specific... tree | commitdiff
2007-06-17 jproctercorrect construction of new dataset sequence when resid... tree | commitdiff
2007-06-17 jprocterjavadoc tree | commitdiff
2007-05-28 jprocterprototype DBRef and Feature Type semantics (for annotat... tree | commitdiff
2007-05-28 jprocterfix compact annotation array routine tree | commitdiff
2007-05-28 jproctercastor mapping unmarshalling logging tree | commitdiff
2007-05-10 jprocterensure that only annotation referenced in given alignme... tree | commitdiff
2007-05-10 jprocterbugfix on copy only referenced annotation in copy const... tree | commitdiff
2007-05-10 jprocterfixed array index out of bounds when not removing align... tree | commitdiff
2007-05-07 amwaterhousetIndex prevented deletion of last annotation tree | commitdiff
2007-05-02 jprocterfeature locations are retrieved by associated accession... tree | commitdiff
2007-05-02 jprocterfeature locations are retrieved by associated accession... tree | commitdiff
2007-05-02 jprocterdocumentation and proxy call to util.MapList.getToWord... tree | commitdiff
2007-05-02 jprocteronly return non-empty subsequences when getting selecti... tree | commitdiff
2007-05-02 jproctersubsequence bound checks and constructor for selectivel... tree | commitdiff
2007-05-02 jprocterreturn flag indicating if annotations were actually... tree | commitdiff
2007-05-02 jprocterchecks for negative start column in restrict tree | commitdiff
2007-05-02 amwaterhousePadgaps is false by default tree | commitdiff
2007-05-01 amwaterhousePad gaps method tree | commitdiff
2007-05-01 jprocterjavadoc tree | commitdiff
2007-05-01 jprocterremoveAlignmentAnnotation only removes annotation objec... tree | commitdiff
2007-04-30 jprocterpad should leave null annotations array null tree | commitdiff
2007-04-30 jprocterconvenient creation of 'score only' annotation. tree | commitdiff
2007-04-27 amwaterhousepadGaps moved tree | commitdiff
2007-04-27 jproctergetProperties returns nullk for no properties tree | commitdiff
2007-04-27 jprocterdocumentation and getProperties method tree | commitdiff
2007-04-26 jprocterget annotation by label string tree | commitdiff
2007-04-26 jprocterfix '\0' bug from score-only positional annotation tree | commitdiff
2007-04-26 jprocterscore is a double, fix bugs for score only annotation... tree | commitdiff
2007-04-26 amwaterhousecolourText = false tree | commitdiff
2007-04-26 jprocterscore and visible copy construction tree | commitdiff
2007-04-26 jprocterfix for null annotations tree | commitdiff
2007-04-26 amwaterhouseremove should be removeElement tree | commitdiff
2007-04-25 jproctermoving word methods to MapList and begin bug-fix for... tree | commitdiff
2007-04-25 amwaterhousealignmentProperties added tree | commitdiff
2007-04-25 jprocterAlignmentAnnotation: added annotation score attribute... tree | commitdiff
2007-04-24 jprocterbugfix for sequence features mapped to multiple contigs... tree | commitdiff
2007-04-24 jprocterupdated mapping for EMBL_Services_V1.1.xsd and tested... tree | commitdiff
2007-04-23 amwaterhouseCheck for null displayCharacters tree | commitdiff
2007-04-23 amwaterhouseColour is null tree | commitdiff
2007-04-23 amwaterhouseremove seqref annotations tree | commitdiff
2007-04-23 amwaterhouseremove alignmentAnnotation added tree | commitdiff
2007-04-20 jprocterfix null annotation values tree | commitdiff
2007-04-20 jproctervalue only annotation tree | commitdiff
2007-04-19 jprocterbugfix tree | commitdiff
2007-04-19 jproctersequence associated alignment annotation copy for colum... tree | commitdiff
2007-04-19 jprocterpadGaps flag in copy constructor tree | commitdiff
2007-04-19 jprocterjavadoc note on padding AlignmentAnnotation to alignmen... tree | commitdiff
2007-04-19 jproctercopying sequenceMapping, restrict(alstart/end) and... tree | commitdiff
2007-04-18 amwaterhouseValidate range for all annotations tree | commitdiff
2007-04-18 amwaterhousePad gaps when annotation editing tree | commitdiff
2007-04-18 amwaterhouseCheck values not null in copy constructor tree | commitdiff
2007-04-18 jprocterjava 1.1 compliance tree | commitdiff
2007-04-17 jprocterascii type tree | commitdiff
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