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JAL-2759 Comments and renaming for has(Many)HiddenColumns after review
[jalview.git]
/
src
/
jalview
/
datamodel
/
2018-01-15
kiramt
JAL-2759 Comments and renaming for has(Many)HiddenColum...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Tidy up javadoc and naming in HiddenColumnsCur...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Update to getHiddenBoundaryRight + unit test...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Updates following review
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 code tidy
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 performance improvements to hideColumns
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 performance tweaks
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 HiddenColumns test polishing
tree
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commitdiff
2017-11-21
kiramt
JAL-2759 corrected old getVisibleBlocksIterator calls...
tree
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commitdiff
2017-11-21
kiramt
JAL-2759 Remove getVisibleBlocksIterator call
tree
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commitdiff
2017-11-21
kiramt
Merge branch 'develop' into feature/JAL-2759
tree
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commitdiff
2017-11-21
kiramt
JAL-2759 unit tests for VisibleContigsIterator
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 cursor option for BoundedStartRegionIterator
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 rationalise visible contigs iteration
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 improvements to speed up synchronisation;...
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 Move isVisible to use cursor
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 tidy
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 Update tests
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 Convert reveal to use cursor
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 HiddenColumnsCursor tests
tree
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commitdiff
2017-11-16
Jim Procter
Merge branch 'bug/JAL-2829deleteCharsWithGaps' into...
tree
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commitdiff
2017-11-13
gmungoc
JAL-2176 removed unused Sequence.index
tree
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commitdiff
2017-11-13
kiramt
JAL-2759 convert findColumnPosition to use cursor
tree
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commitdiff
2017-11-13
kiramt
JAL-2759 Converted getHiddenBoundaryLeft/Right to use...
tree
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commitdiff
2017-11-10
gmungoc
JAL-2829 fixes and unit tests
bug/JAL-2829deleteCharsWithGaps
tree
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commitdiff
2017-11-10
gmungoc
JAL-2562 updated findPosition javadoc to match behaviour
tree
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commitdiff
2017-11-09
kiramt
JAL-2759 make bounds correct for left scrolling with...
tree
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commitdiff
2017-11-08
kiramt
Merge branch 'develop' into feature/JAL-2759
tree
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commitdiff
2017-11-06
kiramt
JAL-2759 fix getHiddenOffset iterating backwards
tree
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commitdiff
2017-10-26
Jim Procter
Merge branch 'feature/JAL-2488finalize' into develop
tree
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commitdiff
2017-10-23
Jim Procter
Merge branch 'bug/JAL-2682parseId' into develop
tree
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commitdiff
2017-10-13
kiramt
JAL-2759 hiddenColumns null check
tree
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commitdiff
2017-10-12
kiramt
JAL-2759 working first pass cursor
tree
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commitdiff
2017-10-11
gmungoc
JAL-2772 check array bounds for sequence access
bug/JAL-2772pdbArrayBounds
tree
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commitdiff
2017-10-11
gmungoc
Merge branch 'bug/JAL-2742' into develop
tree
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commitdiff
2017-10-10
kiramt
JAL-2759 Rearranged iterators
tree
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commitdiff
2017-10-09
gmungoc
JAL-2480 use interface type for sequenceFeatureStore
tree
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commitdiff
2017-10-09
kiramt
JAL-2674 iterator updates
tree
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commitdiff
2017-10-06
kiramt
JAL-2674 Last moves to iterators
tree
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commitdiff
2017-10-06
kiramt
JAL-2647 stashing
tree
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commitdiff
2017-10-05
kiramt
JAL-2674 Removed a stray Vector
tree
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commitdiff
2017-10-05
kiramt
JAL-2674 Rationalising iterators and retesting
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 Adjustments to hideColumns
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 more adjustments to locateVisibleBoundsOfSequence
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 Simplify locateVisibleBoundsOfSequence
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 tidy
tree
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commitdiff
2017-10-03
kiramt
JAL-2674 testing
tree
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commitdiff
2017-10-03
kiramt
JAL-2674 working refactor of drawPanel iteration
tree
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commitdiff
2017-10-03
kiramt
JAL-2674 2nd attempt to refactor seqcanvas drawing...
tree
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commitdiff
2017-10-02
kiramt
JAL-2674 iterator for visible blocks with absolute...
tree
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commitdiff
2017-09-29
kiramt
JAL-2674 Tidies
tree
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commitdiff
2017-09-29
kiramt
JAL-2674 finish with iterators for now
tree
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commitdiff
2017-09-29
kiramt
JAL=2674 Removed getHiddenColumnsCopy
tree
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commitdiff
2017-09-29
kiramt
JAL-2674 reverted attempt at visible regions iterator
tree
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commitdiff
2017-09-28
kiramt
JAL-2647 more iterators
tree
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commitdiff
2017-09-27
kiramt
JAL-2674 Removing most calls to getHiddenColumnsCopy
tree
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commitdiff
2017-09-26
kiramt
JAL-2674 tidied up CigarArray
tree
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commitdiff
2017-09-26
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2742'...
tree
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commitdiff
2017-09-26
kiramt
JAL-2742 fixed
tree
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commitdiff
2017-09-26
kiramt
JAL-2674 Changed CigarArray constructor to use HiddenCo...
tree
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commitdiff
2017-09-26
kiramt
JAL-2674 Changes to pasting
tree
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commitdiff
2017-09-26
kiramt
JAL-2674 HiddenColumns interface tidies
tree
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commitdiff
2017-09-26
kiramt
JAL-2647 Added iterators and associated tests and bench...
tree
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commitdiff
2017-09-25
gmungoc
JAL-2525 return no features if none matches ontology...
tree
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commitdiff
2017-09-22
kiramt
JAL-2674 add bounds to findHiddenRegionPositions
tree
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commitdiff
2017-09-21
kiramt
JAL-2674 Rewrote propagateInsertions
tree
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commitdiff
2017-09-20
kiramt
JAL-2674 fix up interface of locateVisibleBoundsOfSequence
tree
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commitdiff
2017-09-05
Jim Procter
Merge branch 'master' into portforward/JAL-2675_2102b1t...
tree
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commitdiff
2017-09-04
Jim Procter
JAL-2675 source license
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'bug/JAL-2665-2.10.2b' into documentation...
bug/JAL-2673_mergewithproblem
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'documentation/JAL-2675_release2102b1...
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'feature/JAL-2527' into documentation...
tree
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commitdiff
2017-09-01
gmungoc
JAL-2488 remove finalize methods
tree
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commitdiff
2017-08-30
kiramt
Merge branch 'feature/JAL-2664' into feature/JAL-2527
tree
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commitdiff
2017-08-29
kiramt
JAL-2664 Updates following review
feature/JAL-2664
tree
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commitdiff
2017-08-28
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-08-28
kiramt
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2017-08-28
kiramt
JAL-2665 Changes for review comments; printing with...
bug/JAL-2665
tree
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commitdiff
2017-08-23
gmungoc
JAL-2682 non-regex sequence id parsing, and tests added
tree
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commitdiff
2017-08-22
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-08-16
kiramt
JAL-2665 Added hidden columns group selection - almost...
tree
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commitdiff
2017-08-16
kiramt
JAL-2665 Added sequence group update event.
tree
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commitdiff
2017-08-09
gmungoc
JAL-2480 inline one method, improve comments
tree
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commitdiff
2017-08-01
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-07-22
kiramt
Merge branch 'develop' into feature/JAL-2611
tree
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commitdiff
2017-07-19
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-07-13
kiramt
JAL-2613 Unit tests and a fix. Phew.
tree
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commitdiff
2017-07-05
gmungoc
JAL-147 additions to unit test, check for negative...
tree
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commitdiff
2017-07-05
gmungoc
JAL-147 prevent overview box move up over hidden first...
tree
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commitdiff
2017-06-30
gmungoc
JAL-2505 correct handling of change of feature type
tree
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commitdiff
2017-06-30
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-29
kiramt
JAL-2597 Fix and unit test
bug/JAL-2597
tree
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commitdiff
2017-06-27
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-24
gmungoc
JAL-2547 fix case of gap followed by enclosing contact...
tree
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commitdiff
2017-06-23
gmungoc
JAL-1858 handle hidden columns when computing region...
tree
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commitdiff
2017-06-22
gmungoc
JAL-2481 JAL-2593 JAL-2526 further optimisation of...
tree
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commitdiff
2017-06-22
gmungoc
JAL-2480 simpler and safer test to avoid adding duplicates
tree
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commitdiff
2017-06-21
gmungoc
JAL-2480 tidy generic initialisations, SequenceFeatures...
tree
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commitdiff
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