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Merge branch 'Jalview-JS/develop' of https://source.jalview.org/git/jalview.git into...
[jalview.git]
/
src
/
jalview
/
datamodel
/
2017-10-06
kiramt
JAL-2674 Last moves to iterators
tree
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commitdiff
2017-10-06
kiramt
JAL-2647 stashing
tree
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commitdiff
2017-10-05
kiramt
JAL-2674 Removed a stray Vector
tree
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commitdiff
2017-10-05
gmungoc
JAL-2738 update spikes/mungo
tree
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commitdiff
2017-10-05
kiramt
JAL-2674 Rationalising iterators and retesting
tree
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commitdiff
2017-10-05
gmungoc
JAL-2744 add score to feature details report, descripti...
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 Adjustments to hideColumns
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 more adjustments to locateVisibleBoundsOfSequence
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 Simplify locateVisibleBoundsOfSequence
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 tidy
tree
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commitdiff
2017-10-03
kiramt
JAL-2674 testing
tree
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commitdiff
2017-10-03
kiramt
JAL-2674 working refactor of drawPanel iteration
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-10-03
kjvdheide
Added checks for X mouse coordinate being >= 0 and...
tree
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commitdiff
2017-10-03
kiramt
JAL-2674 2nd attempt to refactor seqcanvas drawing...
tree
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commitdiff
2017-10-02
kiramt
JAL-2674 iterator for visible blocks with absolute...
tree
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commitdiff
2017-10-02
kjvdh
Added check for negative start columns
tree
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commitdiff
2017-09-29
gmungoc
JAL-2744 indent CSQ lines to catch the eye
tree
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commitdiff
2017-09-29
kiramt
JAL-2674 Tidies
tree
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commitdiff
2017-09-29
kiramt
JAL-2674 finish with iterators for now
tree
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commitdiff
2017-09-29
kiramt
JAL=2674 Removed getHiddenColumnsCopy
tree
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commitdiff
2017-09-29
kiramt
JAL-2674 reverted attempt at visible regions iterator
tree
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commitdiff
2017-09-28
kiramt
JAL-2647 more iterators
tree
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commitdiff
2017-09-28
gmungoc
JAL-1796 GeneLociI as distinguished DBRefEntry
tree
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commitdiff
2017-09-28
gmungoc
JAL-2744 simple Feature Details report from Popup menu
tree
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commitdiff
2017-09-27
kiramt
JAL-2674 Removing most calls to getHiddenColumnsCopy
tree
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commitdiff
2017-09-26
kiramt
JAL-2674 tidied up CigarArray
tree
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commitdiff
2017-09-26
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2742'...
tree
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commitdiff
2017-09-26
kiramt
JAL-2742 fixed
tree
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commitdiff
2017-09-26
kiramt
JAL-2674 Changed CigarArray constructor to use HiddenCo...
tree
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commitdiff
2017-09-26
kiramt
JAL-2674 Changes to pasting
tree
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commitdiff
2017-09-26
kiramt
JAL-2674 HiddenColumns interface tidies
tree
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commitdiff
2017-09-26
kiramt
JAL-2647 Added iterators and associated tests and bench...
tree
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commitdiff
2017-09-26
gmungoc
JAL-2738 promote setGeneLoci to SequenceI!
tree
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commitdiff
2017-09-25
gmungoc
JAL-2738 getGeneLoci promoted to SequenceI
tree
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commitdiff
2017-09-25
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-09-25
gmungoc
JAL-2525 return no features if none matches ontology...
tree
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commitdiff
2017-09-22
gmungoc
JAL-2738 correct handling of reverse strand genes
tree
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commitdiff
2017-09-22
kiramt
JAL-2674 add bounds to findHiddenRegionPositions
tree
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commitdiff
2017-09-21
kiramt
JAL-2674 Rewrote propagateInsertions
tree
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commitdiff
2017-09-21
gmungoc
JAL-2738 GeneLoci holds mapping of sequence to chromosome
tree
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commitdiff
2017-09-20
kiramt
JAL-2674 fix up interface of locateVisibleBoundsOfSequence
tree
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commitdiff
2017-09-14
gmungoc
JAL-2541 save/Undo only 'diffs' for features with Cut...
tree
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commitdiff
2017-09-14
gmungoc
JAL-2541 length check in deleteChars (redoing lost...
tree
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commitdiff
2017-09-14
gmungoc
JAL-2541 working Cut/Undo with feature relocation
tree
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commitdiff
2017-09-14
gmungoc
JAL-2541 revised cut with features (work in progress)
tree
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commitdiff
2017-09-05
Jim Procter
Merge branch 'master' into portforward/JAL-2675_2102b1t...
tree
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commitdiff
2017-09-04
Jim Procter
JAL-2675 source license
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'bug/JAL-2665-2.10.2b' into documentation...
bug/JAL-2673_mergewithproblem
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'documentation/JAL-2675_release2102b1...
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'feature/JAL-2527' into documentation...
tree
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commitdiff
2017-09-01
gmungoc
JAL-2488 remove finalize methods
tree
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commitdiff
2017-08-30
kiramt
Merge branch 'feature/JAL-2664' into feature/JAL-2527
tree
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commitdiff
2017-08-29
kiramt
JAL-2664 Updates following review
feature/JAL-2664
tree
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commitdiff
2017-08-28
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-08-28
kiramt
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2017-08-28
kiramt
JAL-2665 Changes for review comments; printing with...
bug/JAL-2665
tree
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commitdiff
2017-08-23
gmungoc
JAL-2682 non-regex sequence id parsing, and tests added
tree
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commitdiff
2017-08-22
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-08-16
kiramt
JAL-2665 Added hidden columns group selection - almost...
tree
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commitdiff
2017-08-16
kiramt
JAL-2665 Added sequence group update event.
tree
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commitdiff
2017-08-09
gmungoc
JAL-2480 inline one method, improve comments
tree
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commitdiff
2017-08-01
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-07-24
gmungoc
spike branch updated from latest features/JAL-2446
tree
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commitdiff
2017-07-22
kiramt
Merge branch 'develop' into feature/JAL-2611
tree
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commitdiff
2017-07-19
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-07-13
kiramt
JAL-2613 Unit tests and a fix. Phew.
tree
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commitdiff
2017-07-05
gmungoc
JAL-147 additions to unit test, check for negative...
tree
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commitdiff
2017-07-05
gmungoc
JAL-147 prevent overview box move up over hidden first...
tree
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commitdiff
2017-06-30
gmungoc
JAL-2505 correct handling of change of feature type
tree
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commitdiff
2017-06-30
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-29
kiramt
JAL-2597 Fix and unit test
bug/JAL-2597
tree
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commitdiff
2017-06-27
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-24
gmungoc
Merge branch 'features/JAL-2446NCList' into spikes...
tree
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commitdiff
2017-06-24
gmungoc
JAL-2547 fix case of gap followed by enclosing contact...
tree
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commitdiff
2017-06-24
gmungoc
Merge branch 'features/JAL-2446NCList' into spikes...
tree
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commitdiff
2017-06-23
gmungoc
JAL-1858 handle hidden columns when computing region...
tree
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commitdiff
2017-06-22
gmungoc
JAL-2481 JAL-2593 JAL-2526 further optimisation of...
tree
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commitdiff
2017-06-22
gmungoc
JAL-2480 simpler and safer test to avoid adding duplicates
tree
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commitdiff
2017-06-21
gmungoc
JAL-2480 tidy generic initialisations, SequenceFeatures...
tree
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commitdiff
2017-06-20
gmungoc
JAL-2526 don't retain lastColumnPosition from an invali...
tree
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commitdiff
2017-06-15
gmungoc
Merge branch 'bug/JAL-2386groupConservationColouring...
tree
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commitdiff
2017-06-14
gmungoc
JAL-2598 Sequence.getSequence return a copy of the...
tree
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commitdiff
2017-06-12
kiramt
JAL-2591 Updates following code review
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-06-09
gmungoc
JAL-2480 tidy javadoc
tree
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commitdiff
2017-06-08
gmungoc
JAL-2526 correct boundary conditions for sequence left...
tree
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commitdiff
2017-06-08
gmungoc
JAL-2386 JAL-2570 use ResidueShader copy constructor...
bug/JAL-2386groupConservationColouring
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 Refactor HiddenColumns to use ArrayList instea...
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 More HiddenColumns refactoring. Tests passing.
tree
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commitdiff
2017-06-08
gmungoc
JAL-2526 cache first/last residue column positions...
tree
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commitdiff
2017-06-08
gmungoc
JAL-2526 reuse findIndex result if start==end
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Further refactoring (still incomplete)
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 More refactoring (incomplete)
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Hidden columns regions can be output to string...
tree
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commitdiff
2017-06-07
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 updated HiddenColumns::findHiddenRegionPositio...
tree
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commitdiff
2017-06-07
gmungoc
JAL-2386 ensure group conservation shading is applied...
tree
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commitdiff
next