patch for NPE (not clear if NPE is evidence of deeper bug in feature renderer state)
[jalview.git] / src / jalview / datamodel /
2011-08-18 jprocterfix for JAL-701 - ensure '<' appears in tooltip in...
2011-08-17 jprocterJAL-813 fix - check whether conservation is applied...
2011-07-08 jprocteropen each query result from an alignment datasource...
2011-07-06 jprocterensure selseq is trimmed to just sequences included...
2011-05-05 jprocteruncommentable debug message for JAL-771
2011-04-21 jprocterallow an alignment annotation row to be removed and...
2011-04-21 jprocterallow an existing alignment annotation row to be bound...
2011-02-27 jprocterfirst patch for JAL-774 - ensure end is a valid bound...
2011-01-05 jprocterpropagated groups trimmed to correct region on viscontig
2011-01-05 jproctergraphThreshold not being copied by constructor
2010-12-17 jprocteradjust start and end of intersecting group relative...
2010-12-17 jprocter1.1 compat
2010-12-17 jprocter1.1 compat
2010-12-17 jprocterrefactored gap insert/visible view modification code...
2010-12-17 jprocterjavadoc
2010-12-10 jprocterremove implicit non-1.1 compatible call
2010-12-09 jprocterjava 1.1 patches
2010-12-09 jprocterjava 1.1 patches
2010-12-09 jprocternew methods and test code for JAL-716
2010-12-09 jprocternew constructor and refactored methods for intersecting...
2010-12-09 jprocternew methods for testing for/storing selection/group...
2010-12-09 jprocterjavadoc and additional convenience method for JAL-716
2010-12-02 jprocterrefactored visible contig/gap map array intersection...
2010-11-14 jprocterzero length operations are valid
2010-11-12 jprocterpatch for JAL-700
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-06-11 jprocterpatched for JAL-531 - only display full symbol distribu...
2010-06-08 jprocterPatch for incorrect column selection when hidden region...
2010-06-06 jprocterpatch for JAL-542
2010-06-03 jprocterjavadoc re JAL-554
2010-04-30 jprocterjalview 2.5 release banner
2010-04-29 jproctermake sure references are intact when group annotation...
2010-04-29 jprocterisAligned assertion (bug 0008144)
2010-04-28 jproctergroup/annotation association housekeeping
2010-04-23 jprocterjavadoc
2010-04-16 jprocterpatch for bug #36198 - more to follow on Monday.
2010-04-14 jprocterprofile visualizations are now logos
2010-03-30 jproctername update for group autoannotation and consensus...
2010-03-26 jproctercomments
2010-03-22 jproctertodo and sensible default setting of min/max for histog...
2010-03-11 jprocterindividual label format settings for each annotation...
2009-11-09 jprocterno Vector(Vector) copy constructor in 1.2
2009-11-06 jproctersetting and merging selected columns from another selec...
2009-08-21 jprocterbasic implementation of profile display and todos
2009-08-21 jproctertodo
2009-07-24 jprocterimplement new insert annotation row method and ensure...
2009-07-24 jprocterinsert annotation at specific position
2009-07-24 jprocteroptional sequencegroup ref for annotation row
2009-07-24 jproctersequence groups carry their own conservation and consen...
2009-06-24 jprocterfix to cope with EMBL records containing a CDS fragment...
2009-06-19 jprocterparent db references and mappings added to retrieved...
2009-06-19 jprocterintersect did not intersect (used in selection listener)
2009-06-08 jprocterapply gpl development license
2009-06-01 jprocterapply method for a NodeTransform to nodes in a tree
2009-06-01 jprocterjavadoc
2009-04-14 jprocterpatch to fix occasional arrayoutofbounds exception...
2009-02-24 jprocterbugfix for occasional nullpointer exceptions when selec...
2009-02-06 jproctershowUnconserved group attribute
2008-12-19 jprocteravoid null pointer exception when groupName is not set
2008-12-19 jprocterleft and right justify method
2008-12-05 jproctersupport for multiple accession retrieval from a databas...
2008-11-12 jprocterjdk1.2 compatibility
2008-11-12 jprocternew copy constructor and intersect method
2008-11-12 jprocterinvolvesSequence to check if searchResults intersect...
2008-11-12 jprocterjavadoc and new method to get alignment sequence index...
2008-11-04 jprocterbeginning of implementation of new properties for hide...
2008-09-04 jproctermerge from 2_4_Release branch
2008-08-20 jproctertooltip displays formatted annotation row description...
2008-08-15 jproctersafer copy constructor
2008-08-06 jproctergetDBRefs now always returns DBRefArray if it exists...
2008-07-18 jprocterallow findSeq to begin *after* a given sequence in...
2008-07-18 jprocterSequence label colour stored for each sequence group
2008-06-23 jprocterlocal sequence properties are preserved in SeqCigar...
2008-05-01 jprocterfix for unicode char labels causing arrayOutOfBoundsExc...
2008-02-22 jprocterCDS segment index
2008-02-22 jprocterpossible fix for stockhom ss-annotation re-creation...
2008-02-22 jprocterindex number for contiguous part of mapped sequence...
2008-02-22 jprocterjavadoc
2008-01-22 jprocternew method to get map of sequence positions correspondi...
2007-12-21 jproctersequence db fetcher metadata for multiple sequence...
2007-12-21 jproctertemporary bugfix ?
2007-12-21 jprocterbugfix
2007-12-21 jprocterequivalence for transferring/updating references
2007-11-30 jprocternull pointer bugfix
2007-11-30 jprocterjavadoc and transferAnnotation method
2007-11-30 jproctercase insensitive matching of database ids
2007-11-30 jproctercase invariant matching of seqeunce feature to sequence...
2007-11-16 jprocterjavadoc
2007-11-08 jprocterend must be greater than blockstart
2007-10-31 jprocterjavadoc
2007-10-31 jprocterfix parsing of embl entries like S75919 which have...
2007-10-24 jprocterensure PDB ids are updated on the dataset sequence
2007-10-04 jprocterrefactored invertColumnSelection as an object method
2007-10-02 jprocterconvenience constructor for duplicating an annotation...
2007-10-02 jprocterjavadoc and operator for editing AlignmentAnnotation...
2007-10-02 jprocterjavadoc
2007-09-29 jprocterupdatePDBEntry method to add any PDBEntry from the...
2007-09-29 jprocterfriendlier sequence names for protein products
2007-09-06 jprocterargs for emblfile parser main method
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