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Annotations do not extend when full alignment is adjusted
[jalview.git] / src / jalview / datamodel /
2007-05-02 jprocterfeature locations are retrieved by associated accession... tree | commitdiff
2007-05-02 jprocterfeature locations are retrieved by associated accession... tree | commitdiff
2007-05-02 jprocterdocumentation and proxy call to util.MapList.getToWord... tree | commitdiff
2007-05-02 jprocteronly return non-empty subsequences when getting selecti... tree | commitdiff
2007-05-02 jproctersubsequence bound checks and constructor for selectivel... tree | commitdiff
2007-05-02 jprocterreturn flag indicating if annotations were actually... tree | commitdiff
2007-05-02 jprocterchecks for negative start column in restrict tree | commitdiff
2007-05-02 amwaterhousePadgaps is false by default tree | commitdiff
2007-05-01 amwaterhousePad gaps method tree | commitdiff
2007-05-01 jprocterjavadoc tree | commitdiff
2007-05-01 jprocterremoveAlignmentAnnotation only removes annotation objec... tree | commitdiff
2007-04-30 jprocterpad should leave null annotations array null tree | commitdiff
2007-04-30 jprocterconvenient creation of 'score only' annotation. tree | commitdiff
2007-04-27 amwaterhousepadGaps moved tree | commitdiff
2007-04-27 jproctergetProperties returns nullk for no properties tree | commitdiff
2007-04-27 jprocterdocumentation and getProperties method tree | commitdiff
2007-04-26 jprocterget annotation by label string tree | commitdiff
2007-04-26 jprocterfix '\0' bug from score-only positional annotation tree | commitdiff
2007-04-26 jprocterscore is a double, fix bugs for score only annotation... tree | commitdiff
2007-04-26 amwaterhousecolourText = false tree | commitdiff
2007-04-26 jprocterscore and visible copy construction tree | commitdiff
2007-04-26 jprocterfix for null annotations tree | commitdiff
2007-04-26 amwaterhouseremove should be removeElement tree | commitdiff
2007-04-25 jproctermoving word methods to MapList and begin bug-fix for... tree | commitdiff
2007-04-25 amwaterhousealignmentProperties added tree | commitdiff
2007-04-25 jprocterAlignmentAnnotation: added annotation score attribute... tree | commitdiff
2007-04-24 jprocterbugfix for sequence features mapped to multiple contigs... tree | commitdiff
2007-04-24 jprocterupdated mapping for EMBL_Services_V1.1.xsd and tested... tree | commitdiff
2007-04-23 amwaterhouseCheck for null displayCharacters tree | commitdiff
2007-04-23 amwaterhouseColour is null tree | commitdiff
2007-04-23 amwaterhouseremove seqref annotations tree | commitdiff
2007-04-23 amwaterhouseremove alignmentAnnotation added tree | commitdiff
2007-04-20 jprocterfix null annotation values tree | commitdiff
2007-04-20 jproctervalue only annotation tree | commitdiff
2007-04-19 jprocterbugfix tree | commitdiff
2007-04-19 jproctersequence associated alignment annotation copy for colum... tree | commitdiff
2007-04-19 jprocterpadGaps flag in copy constructor tree | commitdiff
2007-04-19 jprocterjavadoc note on padding AlignmentAnnotation to alignmen... tree | commitdiff
2007-04-19 jproctercopying sequenceMapping, restrict(alstart/end) and... tree | commitdiff
2007-04-18 amwaterhouseValidate range for all annotations tree | commitdiff
2007-04-18 amwaterhousePad gaps when annotation editing tree | commitdiff
2007-04-18 amwaterhouseCheck values not null in copy constructor tree | commitdiff
2007-04-18 jprocterjava 1.1 compliance tree | commitdiff
2007-04-17 jprocterascii type tree | commitdiff
2007-04-17 jproctercopy constructors and AlignmentAnnotation sequenceRef... tree | commitdiff
2007-04-17 jproctercopy constructor and ascii type change. tree | commitdiff
2007-04-12 jprocterbasic support for multi-exon CDS features tree | commitdiff
2007-04-11 amwaterhouseIf hiddenColumns are null, then column is viisble tree | commitdiff
2007-04-02 amwaterhouseDestroy alignment moved to finalize tree | commitdiff
2007-04-02 amwaterhouseDestroy aligment method added tree | commitdiff
2007-03-23 jproctergeneralised feature attribute parsing slightly (no... tree | commitdiff
2007-03-23 jprocterbugfix for 1.1 conversion. tree | commitdiff
2007-03-19 jprocterinitial support for EMBL file parsing. tree | commitdiff
2007-03-19 jprocterequals operation used for canonicalisation of DBRefList... tree | commitdiff
2007-03-19 jproctermapping implemented by MapList added to DBRefEntry. tree | commitdiff
2007-03-19 jprocterjavadoc typo tree | commitdiff
2007-03-19 jproctercopy constructor tree | commitdiff
2007-02-07 amwaterhouseFormatting tree | commitdiff
2007-01-31 amwaterhouseUnique name for new group and treegroup tree | commitdiff
2007-01-31 amwaterhousemake new dataset seq if residues deleted tree | commitdiff
2007-01-31 amwaterhousecopy feature: check for null values tree | commitdiff
2007-01-30 amwaterhouseCheck valid residues in ss tree | commitdiff
2007-01-29 amwaterhouseDescription added tree | commitdiff
2007-01-26 amwaterhouseAnnotationId is hashcode of object tree | commitdiff
2007-01-26 amwaterhouseOnly set the sequence oncecvs diff datamodel/Alignment... tree | commitdiff
2007-01-25 amwaterhouseAnnotation adjustment moved to EditCommand tree | commitdiff
2007-01-24 amwaterhouseAdjustAnnotations needs position, number and insert tree | commitdiff
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport tree | commitdiff
2007-01-19 jprocterdatasetSequence derive method and some checks tree | commitdiff
2007-01-19 jprocterjavadoc tree | commitdiff
2007-01-19 jprocteradded sequence feature copy constructor. tree | commitdiff
2007-01-18 amwaterhouseSet description on copy tree | commitdiff
2007-01-18 amwaterhouseIs secondary structure label modified tree | commitdiff
2006-12-21 amwaterhousecheck on sequence length tree | commitdiff
2006-12-21 amwaterhousegetSequenceAsString tree | commitdiff
2006-12-21 amwaterhousegetSequenceAsString tree | commitdiff
2006-12-21 amwaterhouseremove unnecessary import tree | commitdiff
2006-12-21 jproctertype change tree | commitdiff
2006-12-14 amwaterhouseWatch out for - symbol lin jnet files tree | commitdiff
2006-12-14 amwaterhouseAre the labels all secondary Strutures? are the display... tree | commitdiff
2006-12-07 amwaterhousedont add char[] ref to a string tree | commitdiff
2006-12-06 jproctergeneral pairwise substitution score models for pairwise... tree | commitdiff
2006-12-05 amwaterhouseSequence is char [] tree | commitdiff
2006-11-24 amwaterhouseFix load 1 col hidden bug tree | commitdiff
2006-11-23 amwaterhouseDont make groups of hidden sequences tree | commitdiff
2006-11-20 amwaterhousewarning message changed tree | commitdiff
2006-11-20 amwaterhouseMust copy old dbrefs tree | commitdiff
2006-11-13 amwaterhouseDont readd identical DBRef tree | commitdiff
2006-11-13 amwaterhouseSequence colour moved to viewport tree | commitdiff
2006-11-13 amwaterhouseText colour for group tree | commitdiff
2006-11-08 amwaterhouseSet description tree | commitdiff
2006-11-08 amwaterhousecurrentSeq and set description in dataset tree | commitdiff
2006-11-06 amwaterhouseOnly calculate consenus from start to end tree | commitdiff
2006-11-03 amwaterhouseConsensus may already have been removed tree | commitdiff
2006-10-30 amwaterhousedeleteSequenceFeature tree | commitdiff
2006-10-27 amwaterhouseIf sequence is null, dont add it tree | commitdiff
2006-10-27 amwaterhouseNew padgaps works out number of gaps to insert, delete tree | commitdiff
2006-10-26 amwaterhouseNo need to reduce length if inserting more gaps at... tree | commitdiff
2006-10-26 amwaterhouseCheck if hiddenSequence has been deleted tree | commitdiff
2006-10-25 amwaterhouseWe can delete sequence 0 tree | commitdiff
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