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SwingJS transpiler to 3.2.5.v1 (fixed java.util.stream)
[jalview.git] / src / jalview / datamodel /
2019-09-04 hansonrJAL-3397 final update tree | commitdiff
2019-08-28 hansonrJAL-3253-applet JAL-3397 switch back to original (MC... tree | commitdiff
2019-08-28 hansonrJAL-3253-applet JAL-3423 Windows TestNG tree | commitdiff
2019-08-27 hansonrJAL-3397 JAL-3253-applet tree | commitdiff
2019-08-27 hansonrJAL-3253-applet no-NCList IntervalStore fixes tree | commitdiff
2019-08-26 hansonrJAL-3423 TestNG test bugs tree | commitdiff
2019-08-16 hansonrJAL-3253-applet JAL-3397 JAL-3383 fast IntervalStore... tree | commitdiff
2019-08-16 hansonrJAL-3253-applet JAL-3397 JAL-3383 fast IntervalStore... tree | commitdiff
2019-08-08 hansonrJAL-3383 JAL-3253-applet shortcut binary search when... tree | commitdiff
2019-08-06 hansonrJAL-3383 JAL-3397 JAL-3253-applet IntervalStore options tree | commitdiff
2019-08-05 hansonrJAL-3383 JAL-3253-applet tree | commitdiff
2019-08-04 hansonrJAL-3383 JAL-3253-applet tree | commitdiff
2019-08-04 hansonrJAL-3383 JAL-3253-applet tree | commitdiff
2019-08-04 hansonrJAL-3383 JAL-3253-applet tree | commitdiff
2019-08-03 hansonrJavaDoc comments; minor code clean-up tree | commitdiff
2019-08-03 hansonradds comments JAL-3383 tree | commitdiff
2019-08-03 hansonrJAL-3383 JAL-3253-applet additional efficiencies; Featu... tree | commitdiff
2019-08-01 hansonrJAL-3253-applet JAL-3383 Overview speed up -- see Issue... tree | commitdiff
2019-07-30 hansonrJAL-3253-applet JAL-3383 tree | commitdiff
2019-07-29 hansonrJAL-3383 JAL-3253-applet removes unnecessary updateOver... tree | commitdiff
2019-07-29 hansonrJAL-3383 JAL-3253-applet Allows for possibility of... tree | commitdiff
2019-07-29 hansonrJAL-3383 JAL-3253-applet Java8 switches to clarify... tree | commitdiff
2019-05-21 gmungocJAL-3253-applet disabling button size setting by applet... tree | commitdiff
2019-05-21 gmungocJAL-3253 code tidies and tweaks to Desktop tree | commitdiff
2019-05-15 gmungocJAL-3253-applet feature parameter processing fixed tree | commitdiff
2019-05-15 gmungocJAL-3253 ApplicationSingletonProvider replaces Instance tree | commitdiff
2019-05-10 hansonrJAL-3253 jalview.bin.Instance for AppCache and FeatureA... tree | commitdiff
2019-05-10 hansonrJAL-3253 jalview.bin.Instance streamlining tree | commitdiff
2019-05-08 hansonrJAL-3253 preliminary static fixes for JavaScript part 2 tree | commitdiff
2019-04-18 hansonrminor code clean up tree | commitdiff
2019-04-18 hansonrminor code clean up tree | commitdiff
2019-04-03 hansonrj2sNative clean-up. Fixes problem with second try of... tree | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... tree | commitdiff
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-2839findWi... tree | commitdiff
2019-03-04 gmungocMerge branch 'bug/JAL-3072scrollThread' into merge... tree | commitdiff
2019-03-04 gmungocMerge remote-tracking branch 'origin/bug/JAL-3082select... tree | commitdiff
2019-03-04 gmungocMerge branch 'bug/JAL-3099alignmentVisibleWidth' into... tree | commitdiff
2019-03-01 gmungocMerge branch 'bug/JAL-3164complementOverview' into... tree | commitdiff
2019-03-01 gmungocMerge branch 'feature/intervalStoreJ' into merge/JAL... tree | commitdiff
2019-03-01 gmungocJAL-3140 reduced coupling to intervalstore.jar feature/intervalStoreJ tree | commitdiff
2019-02-28 gmungocJAL-3140 confine intervalstore imports to jalview.datam... tree | commitdiff
2019-02-24 gmungocJAL-3198 SequenceGroup 'bulk constructor' without dupli... tree | commitdiff
2019-02-04 hansonrrefactoring for DBMODList tree | commitdiff
2019-01-29 hansonriterators tree | commitdiff
2019-01-26 hansonrPlatform.timecheck calls removed or commented out. tree | commitdiff
2019-01-26 hansonrremoving cyclic call tree | commitdiff
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... tree | commitdiff
2019-01-17 gmungocMerge branch 'develop' into Jalview-BH/JAL-3026-JAL... tree | commitdiff
2019-01-16 Jim ProcterMerge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA... tree | commitdiff
2018-12-19 Jim ProcterMerge branch 'features/JAL-1767pcaInProject' into bug... tree | commitdiff
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2750' into develop tree | commitdiff
2018-12-17 Jim ProcterMerge branch 'develop' into bug/JAL-2541cutRelocateFeatures tree | commitdiff
2018-11-29 gmungocJAL-3140 NCList now via IntervalStore library tree | commitdiff
2018-11-28 gmungocJAL-3164 redraw complement overview on hide columns bug/JAL-3164complementOverview tree | commitdiff
2018-11-19 Jim ProcterJAL-3156 JAL-3127 code tidy tree | commitdiff
2018-11-19 Jim ProcterJAL-3156 javadoc re JAL-3127 and FIXME to make Alignmen... tree | commitdiff
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... tree | commitdiff
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... tree | commitdiff
2018-09-13 gmungocJAL-3116 Uniprot XML unmarshalled using JAXB not Castor tree | commitdiff
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch tree | commitdiff
2018-09-10 gmungocJAL-3099 new method AlignmentI.getVisibleWidth() tree | commitdiff
2018-08-27 Ben SoaresJAL-3061 / JAL-3053 tree | commitdiff
2018-08-16 gmungocMerge branch 'bug/JAL-3082selectRegex' into Jalview... tree | commitdiff
2018-08-16 gmungocJAL-3082 handle regex error, exclusive threshold, unit... tree | commitdiff
2018-08-10 gmungocJAL-3076 refactor for more efficient scan of 'gene... tree | commitdiff
2018-08-02 Ben SoaresJAL-3053 tree | commitdiff
2018-07-30 bsoaresFixed bug ignoring "alpha" extended braces in RNA SS... tree | commitdiff
2018-07-26 gmungocMerge remote-tracking branch 'origin/bug/JAL-3072scroll... tree | commitdiff
2018-07-25 gmungocJAL-3074 don't scroll up/down on drag out of scale... tree | commitdiff
2018-07-20 gmungocJAL-3048 revised AlignExportSettings dialog with respon... tree | commitdiff
2018-07-11 Jim ProcterJAL-3048 refactored export settings to bean+dialog... Jalview-BH/JAL-3048_exportSettingsrefactor tree | commitdiff
2018-07-06 gmungocJAL-3032 use Math.min/max not Float.min/max tree | commitdiff
2018-07-02 hansonrJAL-3026 GD#75 Stockholm file load fails tree | commitdiff
2018-06-22 gmungocJAL-3032 avoid assignments on the same line as synchronized tree | commitdiff
2018-06-04 Jim ProcterJAL-3017 parse multiple variant elements for uniprot... tree | commitdiff
2018-06-02 Jim ProcterJAL-3017 parse multiple variant elements for uniprot... tree | commitdiff
2018-05-31 gmungocJAL-2808 don't capture or report min-max for mixed... tree | commitdiff
2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2... tree | commitdiff
2018-05-21 gmungocJAL-2920 use HGVS notation for protein variant feature tree | commitdiff
2018-05-11 gmungocJAL-2986 corrected findIndex for out of range residue... tree | commitdiff
2018-05-10 Jim ProcterMerge branch 'bug/JAL-2920_uniprotvariantfeature' into... tree | commitdiff
2018-05-10 Jim ProcterJAL-2920 simplified logic and added corner cases for... tree | commitdiff
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-05-07 gmungocJAL-1767 unit test for save and restore PCA features/JAL-1767pcaInProject tree | commitdiff
2018-05-07 Jim ProcterJAL-2906 apply GPLv3 license source tree | commitdiff
2018-05-04 gmungocJAL-1767 refactorings to enable faithful restore of... tree | commitdiff
2018-04-27 gmungocJAL-1767 refactoring and tidying of RotatableCanvas... tree | commitdiff
2018-04-26 gmungocJAL-2962 code tidying/documentation (non-functional... tree | commitdiff
2018-04-23 gmungocJAL-2954 more efficient SearchResults.markColumns tree | commitdiff
2018-03-16 gmungocMerge remote-tracking branch 'origin/releases/Release_2... tree | commitdiff
2018-03-14 gmungocJAL-2893 include ENSEMBLGENOMES as a 'roundtrip db... tree | commitdiff
2018-03-13 gmungocJAL-2839 addResult ignores duplicates tree | commitdiff
2018-03-09 gmungocJAL-2839 Finder refactoring prior to fixing the defect tree | commitdiff
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-03-07 gmungocJAL-2925 handle empty annotation when copying group... tree | commitdiff
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104 tree | commitdiff
2018-02-26 Jim ProcterJAL-2920 parse variation and original elements of the... tree | commitdiff
2018-02-21 Jim ProcterMerge branch 'bug/JAL-2778again' into releases/Release_... tree | commitdiff
2018-02-21 kiramtJAL-2778 Revert back to old synchronisation tree | commitdiff
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