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JAL-4409 Refactoring to allow easier reuse of classes with getdown
[jalview.git]
/
src
/
jalview
/
ext
/
jmol
/
JalviewJmolBinding.java
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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commitdiff
2023-11-02
James Procter
Merge branch 'develop' into patch/JAL-3921_jmol_session...
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2023-10-20
James Procter
JAL-4307 also report molecule name in tooltip for show...
feature/JAL-4307_hetatm_showhide
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2023-10-20
James Procter
JAL-4307 some models return null for hetatm list
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2023-10-19
James Procter
JAL-4307 View->Ligands submenu, implementation for...
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diff to current
2023-10-13
James Procter
JAL-4295 concatenate all mouseover highlights into...
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diff to current
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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diff to current
2023-03-17
Jim Procter
JAL-3921 allow Jmol saveState to be executed as evalScr...
patch/JAL-3921_jmol_session_save
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2022-10-28
Jim Procter
JAL-4086 commented out attempt to create measurement...
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diff to current
2022-10-27
Ben Soares
JAL-4083 don't need globalUseScriptWait after all,...
bug/JAL-4083_exceptions_for_multiple_residue_highlights_in_jmol
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diff to current
2022-10-27
Ben Soares
JAL-4083 only set globalUseScriptWait if needed
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diff to current
2022-10-27
Ben Soares
JAL-4083 Use jmolViewer.scriptWait instead of jmolViewe...
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diff to current
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
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diff to current
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
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commitdiff
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diff to current
2021-09-15
Ben Soares
JAL-3818 formatting
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diff to current
2021-09-15
gmungoc
JAL-3818 process Jmol callbacks in AWT thread
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commitdiff
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diff to current
2021-09-02
gmungoc
JAL-1842 remove redundant call to FeatureRenderer.featu...
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diff to current
2021-09-02
gmungoc
JAL-3509 better placement of call to notifyFeaturesChan...
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commitdiff
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diff to current
2021-09-02
gmungoc
JAL-3509 coerce RESNUM to hidden (really) after fetchin...
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commitdiff
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diff to current
2021-02-11
gmungoc
JAL-3818 process Jmol callbacks in AWT thread
bug/JAL-3818_jmolDeadlock
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commitdiff
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diff to current
2020-05-29
gmungoc
JAL-3551 null pointer defence while structure files...
feature/JAL-3551Pymol
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diff to current
2020-05-26
gmungoc
JAL-1761 pattern for structure viewer construction...
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diff to current
2020-05-21
gmungoc
JAL-3551 copy Jalview features to Pymol 'p' (with pull...
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2020-05-20
gmungoc
JAL-3626 use Viewer.scriptWait() to send Jmol commands...
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2020-05-19
gmungoc
Merge branch 'develop' into feature/JAL-3551Pymol
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2020-05-15
gmungoc
JAL-3551 pull up Close Viewer dialog to base class
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2020-05-12
gmungoc
JAL-3518 tidy method, remove obsolete comment
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2020-05-12
gmungoc
JAL-3518 failsafe check for null Jmol filename while...
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diff to current
2020-04-30
gmungoc
JAL-3551 save structure viewer session refactorings...
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diff to current
2020-03-16
gmungoc
JAL-3551 tidying, improved commands, fix Jmol model...
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diff to current
2020-03-13
gmungoc
JAL-3551 working proof of concept of Jalview driving...
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diff to current
2020-03-03
gmungoc
JAL-3158 superseded superposeStructures methods removed
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commitdiff
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diff to current
2020-03-03
gmungoc
JAL-3518 more pull up / test coverage of structure...
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diff to current
2020-02-28
gmungoc
JAL-3518 basic refactoring / pull up of superposeStruct...
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diff to current
2020-02-21
gmungoc
JAL-2422 tidy of methods and parameters
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diff to current
2020-02-21
gmungoc
JAL-2422 general pull-up/removal of common or unused...
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diff to current
2020-02-20
gmungoc
JAL-2422 pull-up refactoring of structure commands...
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commitdiff
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diff to current
2020-02-06
gmungoc
JAL-1842 remove redundant call to FeatureRenderer.featu...
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commitdiff
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diff to current
2020-02-06
gmungoc
JAL-3509 better placement of call to notifyFeaturesChan...
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commitdiff
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diff to current
2020-02-06
gmungoc
JAL-3509 coerce RESNUM to hidden (really) after fetchin...
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commitdiff
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diff to current
2020-02-04
gmungoc
JAL-2422 pull up refactoring in preparation for Chimera...
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diff to current
2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
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2019-07-05
gmungoc
JAL-3187 initial refactoring towards peptide variant...
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2019-06-06
gmungoc
Merge branch 'develop' into trialMerge
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diff to current
2019-05-06
gmungoc
JAL-3244 delete obsolete method
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2019-04-16
hansonr
localizes Thread colourby so that it does not cause...
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2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
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diff to current
2019-02-19
gmungoc
JAL-3187 hacks to get peptide variant in to Jmol hover...
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2018-12-25
hansonr
better Jmol help link
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2018-12-06
gmungoc
Merge branch 'develop' into Jalview-BH/JAL-3026-JAL...
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2018-12-06
gmungoc
JAL-1854 fix Checkstyle import violations
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2018-08-27
hansonr
JAL-3026 Jmol functioning; some issues
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2018-08-24
hansonr
JAL-3026 GD#107,128,130,139 build-site.xml
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diff to current
2018-08-21
hansonr
mc_view references were MCview
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2018-07-22
hansonr
allows for null Jmol viewer
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2018-05-04
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_...
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2018-05-01
Jim Procter
JAL-2899 colouring moved from SwingWorker to a backgrou...
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2018-04-30
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_...
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diff to current
2018-04-05
Jim Procter
JAL-2945 resolve model as PDB file. Need to verify...
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2018-02-02
gmungoc
JAL-2899 asynchronous Jmol colour updates
bug/JAL-2899
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2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
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2017-10-25
Jim Procter
Merge branch 'bug/JAL-2392_deadlockonpdbdisplay' into...
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2017-10-24
gmungoc
JAL-2738 update spike branch with latest
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diff to current
2017-10-23
gmungoc
JAL-1854 keep fallthrough but with comment to suppress...
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diff to current
2017-10-23
gmungoc
JAL-1854 remove fallthrough of switch case (Checkstyle...
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diff to current
2017-10-10
Jim Procter
Merge branch 'codereviews/JAL-1990_IProgressIndicator_j...
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commitdiff
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diff to current
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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commitdiff
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diff to current
2017-08-16
Jim Procter
JAL-2418 source formatting
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diff to current
2017-06-09
gmungoc
JAL-2446 merged to spike branch
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diff to current
2017-05-29
Jim Procter
Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...
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diff to current
2017-05-01
tcofoegbu
JAL-2465 bugfix and rerefactor renamed getPdbFile(...
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diff to current
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
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diff to current
2017-03-21
gmungoc
JAL-2438 check for null FeatureRenderer
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commitdiff
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diff to current
2017-03-13
gmungoc
JAL-2438 FeatureColourFinder refactored from FeatureRen...
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diff to current
2017-03-08
gmungoc
JAL-2430 colour columns hidden in alignment gray on...
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diff to current
2017-03-07
gmungoc
JAL-2295 status messages for Chimera attributes set...
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diff to current
2017-01-09
gmungoc
JAL-2371 remove ColourSchemeI.findColour(c), pure inter...
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diff to current
2016-12-22
gmungoc
JAL-2360 structure viewers now using ColourMenuHelper...
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commitdiff
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diff to current
2016-12-12
gmungoc
JAL-2632 corrected lookup of residue colour
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2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
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diff to current
2016-11-22
Jim Procter
Merge branch 'features/JAL-2177_update_jmol_to_14.6...
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commitdiff
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diff to current
2016-11-10
tcofoegbu
JAL-2317 Fixed Chimera command for hiding/showing disti...
bug/JAL-2317_jmol_chimera-chain-factorisation
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commitdiff
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diff to current
2016-11-10
tcofoegbu
Bugfix to enable accurate chain extraction/association...
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commitdiff
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diff to current
2016-10-27
tcofoegbu
JAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11...
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commitdiff
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diff to current
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
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diff to current
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
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commitdiff
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diff to current
2016-10-13
gmungoc
JAL-2044 ensure AAStructureBindingModel.pdbEntry has...
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commitdiff
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diff to current
2016-10-11
gmungoc
JAL-2233 reverted changes to Jmol logging levels
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commitdiff
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diff to current
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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commitdiff
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diff to current
2016-10-05
Jim Procter
JAL-2189 source formatting
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commitdiff
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diff to current
2016-09-27
gmungoc
JAL-2233 less verbose logging for Jmol
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commitdiff
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diff to current
2016-07-11
gmungoc
file format enum wip changes
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commitdiff
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diff to current
2016-06-23
gmungoc
JAL-2130 now simply viewer.dispose() to close down...
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2016-06-20
gmungoc
JAL-2130 call viewer.dispose() on closing Jmol
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diff to current
2016-03-22
tcofoegbu
JAL-1919 code improvement to make PDB sequence fetcher...
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diff to current
2016-02-25
tcofoegbu
JAL-1919 initial support for mmCIF using JMol API....
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diff to current
2015-11-11
tcofoegbu
JAL-1479 JAL-1957 Added code to enable simultaneous...
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diff to current
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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