2023-10-20 |
James Procter | JAL-4307 some models return null for hetatm list |
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2023-10-19 |
James Procter | JAL-4307 View->Ligands submenu, implementation for... |
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2023-10-13 |
James Procter | JAL-4295 concatenate all mouseover highlights into... |
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2023-08-10 |
Ben Soares | JAL-629 Change all stdout and stderr output to use... |
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2022-10-28 |
Jim Procter | JAL-4086 commented out attempt to create measurement... |
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2022-10-27 |
Ben Soares | JAL-4083 don't need globalUseScriptWait after all,... bug/JAL-4083_exceptions_for_multiple_residue_highlights_in_jmol |
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2022-10-27 |
Ben Soares | JAL-4083 only set globalUseScriptWait if needed |
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2022-10-27 |
Ben Soares | JAL-4083 Use jmolViewer.scriptWait instead of jmolViewe... |
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2022-02-11 |
Jim Procter | JAL-3949 - refactor logging from jalview.bin.Cache... |
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2022-02-11 |
Ben Soares | JAL-3949 Complete new abstracted logging framework... |
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2021-09-15 |
Ben Soares | JAL-3818 formatting |
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2021-09-15 |
gmungoc | JAL-3818 process Jmol callbacks in AWT thread |
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2021-09-02 |
gmungoc | JAL-1842 remove redundant call to FeatureRenderer.featu... |
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2021-09-02 |
gmungoc | JAL-3509 better placement of call to notifyFeaturesChan... |
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2021-09-02 |
gmungoc | JAL-3509 coerce RESNUM to hidden (really) after fetchin... |
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2021-02-11 |
gmungoc | JAL-3818 process Jmol callbacks in AWT thread bug/JAL-3818_jmolDeadlock |
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2020-05-29 |
gmungoc | JAL-3551 null pointer defence while structure files... feature/JAL-3551Pymol |
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2020-05-26 |
gmungoc | JAL-1761 pattern for structure viewer construction... |
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2020-05-21 |
gmungoc | JAL-3551 copy Jalview features to Pymol 'p' (with pull... |
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2020-05-20 |
gmungoc | JAL-3626 use Viewer.scriptWait() to send Jmol commands... |
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2020-05-19 |
gmungoc | Merge branch 'develop' into feature/JAL-3551Pymol |
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2020-05-15 |
gmungoc | JAL-3551 pull up Close Viewer dialog to base class |
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2020-05-12 |
gmungoc | JAL-3518 tidy method, remove obsolete comment |
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2020-05-12 |
gmungoc | JAL-3518 failsafe check for null Jmol filename while... |
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2020-04-30 |
gmungoc | JAL-3551 save structure viewer session refactorings... |
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2020-03-16 |
gmungoc | JAL-3551 tidying, improved commands, fix Jmol model... |
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2020-03-13 |
gmungoc | JAL-3551 working proof of concept of Jalview driving... |
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2020-03-03 |
gmungoc | JAL-3158 superseded superposeStructures methods removed |
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2020-03-03 |
gmungoc | JAL-3518 more pull up / test coverage of structure... |
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2020-02-28 |
gmungoc | JAL-3518 basic refactoring / pull up of superposeStruct... |
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2020-02-21 |
gmungoc | JAL-2422 tidy of methods and parameters |
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2020-02-21 |
gmungoc | JAL-2422 general pull-up/removal of common or unused... |
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2020-02-20 |
gmungoc | JAL-2422 pull-up refactoring of structure commands... |
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2020-02-06 |
gmungoc | JAL-1842 remove redundant call to FeatureRenderer.featu... |
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2020-02-06 |
gmungoc | JAL-3509 better placement of call to notifyFeaturesChan... |
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2020-02-06 |
gmungoc | JAL-3509 coerce RESNUM to hidden (really) after fetchin... |
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2020-02-04 |
gmungoc | JAL-2422 pull up refactoring in preparation for Chimera... |
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2019-10-08 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
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2019-07-16 |
gmungoc | JAL-3210 Merge branch 'develop' into trialMerge |
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2019-07-05 |
gmungoc | JAL-3187 initial refactoring towards peptide variant... |
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2019-06-06 |
gmungoc | Merge branch 'develop' into trialMerge |
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2019-05-06 |
gmungoc | JAL-3244 delete obsolete method |
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2019-04-16 |
hansonr | localizes Thread colourby so that it does not cause... |
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2019-03-20 |
Ben Soares | JAL-3130 Lots of deprecation fixes. See utils/deprecat... |
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2019-02-19 |
gmungoc | JAL-3187 hacks to get peptide variant in to Jmol hover... |
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2018-12-25 |
hansonr | better Jmol help link |
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2018-12-06 |
gmungoc | Merge branch 'develop' into Jalview-BH/JAL-3026-JAL... |
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2018-12-06 |
gmungoc | JAL-1854 fix Checkstyle import violations |
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2018-08-27 |
hansonr | JAL-3026 Jmol functioning; some issues |
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2018-08-24 |
hansonr | JAL-3026 GD#107,128,130,139 build-site.xml |
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2018-08-21 |
hansonr | mc_view references were MCview |
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2018-07-22 |
hansonr | allows for null Jmol viewer |
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2018-05-04 |
Jim Procter | Merge branch 'bug/JAL-2899' into releases/Release_2_10_... |
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2018-05-01 |
Jim Procter | JAL-2899 colouring moved from SwingWorker to a backgrou... |
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2018-04-30 |
Jim Procter | Merge branch 'bug/JAL-2899' into releases/Release_2_10_... |
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2018-04-05 |
Jim Procter | JAL-2945 resolve model as PDB file. Need to verify... |
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2018-02-02 |
gmungoc | JAL-2899 asynchronous Jmol colour updates bug/JAL-2899 |
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2017-10-27 |
gmungoc | JAL-1793 spike branch updated to latest |
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2017-10-25 |
Jim Procter | Merge branch 'bug/JAL-2392_deadlockonpdbdisplay' into... |
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2017-10-24 |
gmungoc | JAL-2738 update spike branch with latest |
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2017-10-23 |
gmungoc | JAL-1854 keep fallthrough but with comment to suppress... |
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2017-10-23 |
gmungoc | JAL-1854 remove fallthrough of switch case (Checkstyle... |
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2017-10-10 |
Jim Procter | Merge branch 'codereviews/JAL-1990_IProgressIndicator_j... |
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2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
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2017-08-16 |
Jim Procter | JAL-2418 source formatting |
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2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
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2017-05-29 |
Jim Procter | Merge branch 'features/JAL-2465_No-mapping_Jmol-structu... |
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2017-05-01 |
tcofoegbu | JAL-2465 bugfix and rerefactor renamed getPdbFile(... |
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2017-04-24 |
kiramt | JAL-2388 Hidden cols separated from column selection... |
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2017-03-21 |
gmungoc | JAL-2438 check for null FeatureRenderer |
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2017-03-13 |
gmungoc | JAL-2438 FeatureColourFinder refactored from FeatureRen... |
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2017-03-08 |
gmungoc | JAL-2430 colour columns hidden in alignment gray on... |
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2017-03-07 |
gmungoc | JAL-2295 status messages for Chimera attributes set... |
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2017-01-09 |
gmungoc | JAL-2371 remove ColourSchemeI.findColour(c), pure inter... |
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2016-12-22 |
gmungoc | JAL-2360 structure viewers now using ColourMenuHelper... |
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2016-12-12 |
gmungoc | JAL-2632 corrected lookup of residue colour |
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2016-11-25 |
gmungoc | Merge branch 'develop' into trialMerge |
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2016-11-22 |
Jim Procter | Merge branch 'features/JAL-2177_update_jmol_to_14.6... |
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2016-11-10 |
tcofoegbu | JAL-2317 Fixed Chimera command for hiding/showing disti... bug/JAL-2317_jmol_chimera-chain-factorisation |
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2016-11-10 |
tcofoegbu | Bugfix to enable accurate chain extraction/association... |
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2016-10-27 |
tcofoegbu | JAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11... |
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2016-10-25 |
Jim Procter | JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch |
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2016-10-24 |
Jim Procter | Merge branch 'releases/Release_2_10_0_Branch' |
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2016-10-13 |
gmungoc | JAL-2044 ensure AAStructureBindingModel.pdbEntry has... |
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2016-10-11 |
gmungoc | JAL-2233 reverted changes to Jmol logging levels |
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2016-10-06 |
Jim Procter | JAL-2089 Merge branch releases/Release_2_10_Branch... |
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2016-10-05 |
Jim Procter | JAL-2189 source formatting |
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2016-09-27 |
gmungoc | JAL-2233 less verbose logging for Jmol |
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2016-07-11 |
gmungoc | file format enum wip changes |
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2016-06-23 |
gmungoc | JAL-2130 now simply viewer.dispose() to close down... |
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2016-06-20 |
gmungoc | JAL-2130 call viewer.dispose() on closing Jmol |
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2016-03-22 |
tcofoegbu | JAL-1919 code improvement to make PDB sequence fetcher... |
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2016-02-25 |
tcofoegbu | JAL-1919 initial support for mmCIF using JMol API.... |
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2015-11-11 |
tcofoegbu | JAL-1479 JAL-1957 Added code to enable simultaneous... |
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2015-10-16 |
Jim Procter | JAL-1925 update source version in license Release_2_9_0b2 |
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2015-10-08 |
Jim Procter | JAL-1894 update year/version in copyright |
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2015-09-10 |
Jim Procter | JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... |
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2015-09-10 |
Jim Procter | JAL-1645 source formatting and organise imports |
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2015-08-26 |
gmungoc | JAL-1759 corrected syntax for 'atom picked' callback... |
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2015-08-19 |
gmungoc | JAL-1742 suppress 'add chain' option for Jmol, pull... |
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