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JAL-2805 more interface work
[jalview.git] / src / jalview / ext /
2017-11-13 kjvdheideJAL-2805 more interface work tree | commitdiff
2017-11-13 kjvdheideJAL-2794 removed unused interface tree | commitdiff
2017-11-13 kjvdheideJAL-2805 undid accidental double (buggy) binding, more... tree | commitdiff
2017-11-13 kjvdheideJAL-2805 warning messages added if Forester detects... tree | commitdiff
2017-11-13 kjvdheideJAL-2805 First try at loading tree through Forester... tree | commitdiff
2017-11-10 kjvdheideJAL-2794 reorganized node select code, added subtree... tree | commitdiff
2017-11-10 kjvdheideJAL-2794 comments comments comments tree | commitdiff
2017-11-10 kjvdheideJAL-2794 most method parameters/class variables made... tree | commitdiff
2017-11-10 kjvdheideJAL-2794 comments, selected node now doesn't have to... tree | commitdiff
2017-11-09 kjvdheideJAL-2794 PaintRefresher support, Aptx node selection... tree | commitdiff
2017-11-09 kjvdheideJAL-2794 interface comment tree | commitdiff
2017-11-09 kjvdheideJAL-2794 Made HashMap with Nodes as keys and sequences... tree | commitdiff
2017-11-08 kjvdheideJAL-2794 Aptx instances get their parent alignment... tree | commitdiff
2017-11-08 kjvdheideJAL-2794 Cleaning up tree conversion, sequences are... tree | commitdiff
2017-11-08 kjvdheideJAL-2795 created static class for forester conversions tree | commitdiff
2017-11-08 kjvdheideJAL-2794 Interface name change (oops) tree | commitdiff
2017-11-08 kjvdheideJAL-2794 made JalviewTreeViewerBinding an interface tree | commitdiff
2017-11-03 kjvdheideJAL-2794 created tree viewer binding class tree | commitdiff
2017-11-03 kjvdheideJAL-2795 bunch of cleanup and comments tree | commitdiff
2017-11-02 kjvdheideJAL-2795 added back test loop for Aptx tree naming... tree | commitdiff
2017-11-02 kjvdheideJAL-2795 Reverted code changes needed to cluster from... tree | commitdiff
2017-11-02 kjvdheideJAL-2795 Forester now NJ-clusters the DistanceMatrix... tree | commitdiff
2017-11-02 kjvdheideJAL-2795 moved matrix conversion to the ForesterMatrix... tree | commitdiff
2017-11-01 kjvdheideJAL-2795 Sequence[] references now as SequenceI[] ... tree | commitdiff
2017-11-01 kjvdheideJAL-2795 removed sequences[] class variable, more comments tree | commitdiff
2017-10-30 kjvdheideJAL-2795 added error catching for invalid identifier tree | commitdiff
2017-10-30 kjvdheideJAL-2795 changed getting index of identifier to Stream... tree | commitdiff
2017-10-30 kjvdheideJAL-2795 rebuilt MatrixConverter to be purely static tree | commitdiff
2017-10-30 kjvdheideJAL-2795 finalized method arguments; commited forester... tree | commitdiff
2017-10-30 kjvdheideJAL-2795 removed unneeded for loop (woops) and initiali... tree | commitdiff
2017-10-30 kjvdheideJAL-2795 implemented getting/setting identifiers tree | commitdiff
2017-10-30 kjvdheideJAL-2795 added comments links from ForesterMatrix to... tree | commitdiff
2017-10-30 kjvdheideJAL-2795 removed now unneeded values variable in Forest... tree | commitdiff
2017-10-30 kjvdheideJAL-2795 add get for all matrix values to MatrixI ... tree | commitdiff
2017-10-30 kjvdheideJAL-2795 foresterMatrix now stores distance values... tree | commitdiff
2017-10-29 kjvdheideJAL-2795 more matrix implementations tree | commitdiff
2017-10-28 kjvdheideJAL-2795 moved ForesterMatrix to ext.forester tree | commitdiff
2017-10-28 kjvdheideJAL-2795 Added get and set values to the converted... tree | commitdiff
2017-10-27 kjvdheideJAL-2795 start of Jalview's Matrix conversion tree | commitdiff
2017-10-26 kjvdheideStart of matrix converter tree | commitdiff
2017-10-26 kjvdheideAdded proper title to aptx trees tree | commitdiff
2017-10-26 kjvdheideAdded TreeBuilder as parameter to the converter constructor tree | commitdiff
2017-10-26 kjvdheideName changed of aptx treebuilder to treeconverter tree | commitdiff
2017-10-26 kjvdheidenamed most Jalview threads tree | commitdiff
2017-10-25 kjvdheidefinished up tests for trees made from jalview data tree | commitdiff
2017-10-25 kjvdheideMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2392_deadlockonpdbdisplay' into... tree | commitdiff
2017-10-24 kjvdheideTests for Aptx tree created from a Phylogeny object... tree | commitdiff
2017-10-24 kjvdheideMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2253' into develop tree | commitdiff
2017-10-23 gmungocJAL-1854 keep fallthrough but with comment to suppress... tree | commitdiff
2017-10-23 gmungocJAL-1854 remove fallthrough of switch case (Checkstyle... tree | commitdiff
2017-10-20 gmungocJAL-2253 pull up constant, additional unit test bug/JAL-2253 tree | commitdiff
2017-10-17 Jim ProcterJAL-2777 patch for whitespace chain bugs/JAL-2777_whitespaceChain tree | commitdiff
2017-10-13 kjvdheidebasic tests for Aptx tree | commitdiff
2017-10-13 kjvdheideArchaeopteryxInit is now static tree | commitdiff
2017-10-13 kjvdheidesimplified aptx frame creation code tree | commitdiff
2017-10-13 kjvdheideSlight Aptx colour change tree | commitdiff
2017-10-12 kjvdheideCustom aptx configuration added tree | commitdiff
2017-10-12 kjvdheidemoved Aptx creation from CalculationChooser to separate... tree | commitdiff
2017-10-12 kjvdheideCreated test class for Archaeopteryx tree viewing tree | commitdiff
2017-10-11 kjvdheideforester as submodule with InternalFrame + start of... tree | commitdiff
2017-10-11 kjvdheidejust a comment tree | commitdiff
2017-10-11 kjvdheideAdded tree building (without distances yet) tree | commitdiff
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j... tree | commitdiff
2017-10-10 kjvdheideMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-10-10 kjvdheideStart of programmatically creating Aptx trees tree | commitdiff
2017-10-09 kjvdheideStart of creating tree nodes for Aptx tree | commitdiff
2017-10-09 kjvdheideFully separated tree GUI from calculation tree | commitdiff
2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries tree | commitdiff
2017-10-09 gmungocJAL-2523 convenience method to get model organisms tree | commitdiff
2017-10-07 kjvdheideRenaming tree | commitdiff
2017-10-06 kjvdheideStart of creating the objects Archaeopteryx needs tree | commitdiff
2017-10-05 kjvdheideBlank interfaces added tree | commitdiff
2017-10-04 gmungocJAL-2523 start of refactoring... tree | commitdiff
2017-10-03 kjvdheideProper copyright dating added tree | commitdiff
2017-10-03 kjvdheideMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-10-03 kjvdheideKept copyright test to just the new classes tree | commitdiff
2017-10-03 kjvdheideCopyright test tree | commitdiff
2017-10-02 gmungocJAL-2525 lookup transcript features by Ontology tree | commitdiff
2017-09-29 kjvdheideBegin separation of GUI and tree calculation logic origin/spikes/koen tree | commitdiff
2017-08-31 gmungocJAL-2105 REST versions updated to 6.1 (Ensembl) 6.0... tree | commitdiff
2017-08-31 gmungocJAL-2253 safer simpler resolution of identifiers using... tree | commitdiff
2017-08-25 gmungocJAL-2480 suppress debug timing output that got left in tree | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 add GPL to main sources tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the... tree | commitdiff
2017-06-05 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-04 Jim ProcterJAL-2582 comment about IDs being lost if they resembl... tree | commitdiff
2017-06-04 Jim ProcterJAL-2582 recognise ENS…P peptide IDs and make two getPa... tree | commitdiff
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... tree | commitdiff
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const... tree | commitdiff
2017-05-24 gmungocJAL-2529 add object_type=cdna to EnsemblCdna parameters tree | commitdiff
2017-05-18 gmungocJAL-2490 retrieve visible features only tree | commitdiff
2017-05-16 gmungocJAL-2525 put in missing "transcript" feature type tree | commitdiff
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s... tree | commitdiff
2017-05-12 gmungocJAL-2480 renamed java.util.RangeComparator to IntRangeC... tree | commitdiff
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