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JAL-3187 'on top' optional for complementary features
[jalview.git]
/
src
/
jalview
/
gui
/
AlignFrame.java
2019-02-12
gmungoc
Merge branch 'features/JAL-3010ontologyFeatureSettings...
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2018-09-19
gmungoc
Merge branch 'develop' into features/JAL-3010ontologyFe...
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2018-09-19
gmungoc
JAL-3063 use JAXB for 'Save as Project' and load projec...
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2018-09-18
gmungoc
JAL-3063 New View via JAXB
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2018-09-18
gmungoc
JAL-3063 temporary extra menu option to save/load proje...
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2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
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2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
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2018-09-07
Jim Procter
JAL-3107 update any group associated annotation rows...
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2018-06-04
gmungoc
JAL-3010 select/hide columns includes subtypes in Summa...
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2018-05-28
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
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2018-05-23
gmungoc
JAL-2993 AlignFrame listen for keystrokes in OverviewPanel
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2018-05-09
gmungoc
JAL-2984 add pdb as sequence(s) if associate structure...
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2018-03-16
gmungoc
Merge branch 'bug/JAL-2865removeGC' into develop
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2018-03-07
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
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2018-02-27
Jim Procter
Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104
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2018-02-20
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
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2018-02-13
Jim Procter
JAL-2781 refactor ‘trim retrieved sequence’ preference...
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2018-01-15
kiramt
JAL-2759 Refactor of hideInsertionsFor after review
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2018-01-10
gmungoc
JAL-2865 unhelpful System.gc() calls removed
bug/JAL-2865removeGC
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2018-01-10
gmungoc
JAL-1793 update spike branch to latest
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2017-12-08
gmungoc
JAL-2843 refactor / tidy for feature filter input/output
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2017-12-04
gmungoc
JAL-2850 JAL-1766 option to load contig sequence refere...
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2017-11-08
kiramt
Merge branch 'develop' into feature/JAL-2759
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2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
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2017-10-27
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
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2017-10-26
Jim Procter
Merge branch 'feature/JAL-2488finalize' into develop
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2017-10-26
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
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2017-10-25
Jim Procter
Merge branch 'bug/JAL-2727closeAllFreeMemory' into...
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2017-10-24
gmungoc
JAL-2738 update spike branch with latest
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2017-10-24
gmungoc
Merge branch 'develop' into features/JAL-1793VCF; lambd...
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2017-10-20
gmungoc
Push 1793 latest to spike branch
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2017-10-19
gmungoc
JAL-2755 find gene loci for fetched xrefs where possible
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2017-10-12
Jim Procter
JAL-2773 add new flag to paintAlignment(updateOverview...
features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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2017-09-26
kiramt
JAL-2674 more List<int[]> -> HiddenColumns copy changes
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2017-09-26
kiramt
JAL-2674 Changes to pasting
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2017-09-22
gmungoc
JAL-2738 correct handling of reverse strand genes
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2017-09-21
gmungoc
JAL-2738 PoC of Load VCF file on to gene sequence
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2017-09-12
gmungoc
JAL-2727 ensure ViewportRanges (and gapcounts) are...
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2017-09-01
gmungoc
JAL-2488 remove finalize methods
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2017-08-29
Jim Procter
JAL-2698 spawn a thread to test for and raise auto...
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2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
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2017-08-16
Jim Procter
JAL-2418 source formatting
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2017-08-09
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
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2017-08-07
Jim Procter
Merge branch 'bug/JAL-2592userDefinedScheme' into develop
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2017-08-02
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
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2017-07-28
kiramt
JAL-2632 Added paintAlignment(true) to show cols code
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2017-07-24
gmungoc
spike branch updated from latest features/JAL-2446
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2017-07-19
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
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2017-07-04
gmungoc
JAL-147 remove redundant calls to update overview panel
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2017-07-04
gmungoc
JAL-2608 tidy up OverviewPanel when closed
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2017-06-29
gmungoc
JAL-147 improved wrapped scrolling (including Overview...
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2017-06-27
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
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2017-06-26
gmungoc
JAL-1858 ensure full redraw on 'remove all selections'
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2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-06-09
gmungoc
JAL-2592 distinguish "User Defined" (scheme name) from...
bug/JAL-2592userDefinedScheme
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2017-06-08
kiramt
JAL-2591 Refactor HiddenColumns to use ArrayList instea...
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2017-06-07
kiramt
JAL-2591 Further refactoring (still incomplete)
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2017-06-07
kiramt
JAL-2591 More refactoring (incomplete)
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2017-06-07
kiramt
JAL-2591 More rationalising of hiddencols
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2017-06-07
kiramt
JAL-2591 simplifying hidden columns usage
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2017-05-29
Jim Procter
Merge branch 'bug/JAL-2536' into develop
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2017-05-16
kiramt
JAL-2536 Overview window sizing not subject to min...
bug/JAL-2536
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2017-05-15
kiramt
Merge remote-tracking branch 'origin/develop' into...
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2017-05-12
Jim Procter
Merge branch 'features/JAL-2388OverviewWindow' into...
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2017-05-11
kiramt
JAL-2491 Unit tests and updates
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2017-05-08
gmungoc
JAL-1632 i18n for warning messages
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2017-05-08
kiramt
JAL-2491 Started moving other scrolling fns into viewpo...
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2017-05-05
kiramt
Merge remote-tracking branch
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2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
features/JAL-2388hiddencolumnschanges
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2017-05-02
gmungoc
JAL-2499 JAL-2403 push 'configure for view' inside...
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2017-04-25
kiramt
JAL-2388 Working hidden regions hide/show in desktop
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2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
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2017-04-12
gmungoc
JAL-1632 removed check for aligned sequences for Tree...
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2017-04-12
gmungoc
JAL-1632 one PCA/Tree per panel, closed when panel...
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2017-04-07
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
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2017-04-05
gmungoc
JAL-2361 simplify constructors, select unsaved but...
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2017-03-31
gmungoc
Merge branch 'develop' into bug/JAL-2431splitFrameNewView
bug/JAL-2431splitFrameNewView
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2017-03-30
gmungoc
JAL-1608 leave Create Group, Remove Group menu items...
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2017-03-29
gmungoc
Merge branch 'develop' into bug/JAL-1608createGroups
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2017-03-24
gmungoc
JAL-1632 TreeChooser renamed CalculationChooser, text...
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2017-03-24
gmungoc
JAL-838 move two callers off Comparison.PID and depreca...
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2017-03-23
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
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2017-03-16
kiramt
JAL-2388 Applied ViewportRanges to code
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2017-03-15
gmungoc
JAL-2431 show cDNA consensus after New View in split...
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2017-02-27
kiramt
JAL-2388 Make startRes,startSeq,endRes,endSeq private...
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2017-02-27
gmungoc
JAL-1632 similarity options on TreeChooser panel affect...
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2017-02-27
gmungoc
JAL-1632 refactored NJTree constructor to include Simil...
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2017-02-23
gmungoc
JAL-2403 JAL-1483 changes to ScoreModelI hierarchy...
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2017-02-20
gmungoc
JAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix...
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2017-02-17
gmungoc
JAL-2423 refactored method to build panel title for...
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2017-02-14
gmungoc
Parsing moved to (new) ScoreMatrixFile, drag and drop...
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2017-02-13
gmungoc
JAL-1632 first cut of Tree chooser dialog and ScoreMode...
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diff to current
2017-02-09
gmungoc
JAL-1608 menu entry text; enable/disable Create/Remove...
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2017-01-31
gmungoc
JAL-2371 rename global/viewportColourScheme to residueS...
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2017-01-31
gmungoc
JAL-2385 more tests/bug fixes mostly for gui.SliderPane...
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2017-01-23
gmungoc
JAL-2386 unit tests for change colour (and minor refact...
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2017-01-23
gmungoc
JAL-2386 simplify changeColour (doesn't change colour...
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2017-01-20
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
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2017-01-20
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
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