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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / src / jalview / gui / AlignFrame.java
2018-07-10 gmungocJAL-3048 obsolete method deleted commit | commitdiff
2018-07-10 Jim ProcterJAL-3048 switch from 'dialogdata' to DialogRunner for... commit | commitdiff
2018-07-03 hansonrMerge remote-tracking branch 'origin/Jalview-BH/JAL... commit | commitdiff
2018-07-02 hansonrJAL-3026 File...Reload working commit | commitdiff
2018-07-02 hansonrJAL-3026 Java+JavaScript fix for GD#95 commit | commitdiff
2018-07-02 Jim ProcterJAL-3048 remove TODOs Jalview-BH/JAL-3048_dialogs commit | commitdiff
2018-07-02 Jim ProcterJAL-3048 File->VCF load refactored commit | commitdiff
2018-07-02 Jim ProcterJAL-3048 AlignFrame -> Save dialog refactored - patched... commit | commitdiff
2018-06-29 Jim ProcterJAL-3048 use FileParse to transfer File to NewickFile... commit | commitdiff
2018-06-29 Jim ProcterJAL-3048 AlignFrame->File->Load Tree adapted for js commit | commitdiff
2018-06-28 Jim ProcterJAL-3048 TODOs for refactoring JalviewFileChooser pattern commit | commitdiff
2018-06-28 Jim ProcterJAL-3048 todo and JAL-3026 disable VCF support commit | commitdiff
2018-06-28 hansonrJAL-3032 DND enabled; additional io changes for File... commit | commitdiff
2018-06-27 hansonrJAL-3032 part2 local file reading by JFileChooser commit | commitdiff
2018-06-23 hansonrJAL-3026 JDesktop/JInternalFrames support + relative... commit | commitdiff
2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2... commit | commitdiff
2018-05-23 gmungocJAL-2993 AlignFrame listen for keystrokes in OverviewPanel commit | commitdiff
2018-05-09 gmungocJAL-2984 add pdb as sequence(s) if associate structure... commit | commitdiff
2018-03-16 gmungocJAL-2620 alternative genetic code translation tables commit | commitdiff
2018-03-16 gmungocMerge branch 'bug/JAL-2865removeGC' into develop commit | commitdiff
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... commit | commitdiff
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104 commit | commitdiff
2018-02-20 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... commit | commitdiff
2018-02-13 Jim ProcterJAL-2781 refactor ‘trim retrieved sequence’ preference... commit | commitdiff
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review commit | commitdiff
2018-01-10 gmungocJAL-2865 unhelpful System.gc() calls removed bug/JAL-2865removeGC commit | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest commit | commitdiff
2017-12-08 gmungocJAL-2843 refactor / tidy for feature filter input/output commit | commitdiff
2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence refere... commit | commitdiff
2017-11-08 kiramtMerge branch 'develop' into feature/JAL-2759 commit | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest commit | commitdiff
2017-10-27 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop commit | commitdiff
2017-10-26 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into... commit | commitdiff
2017-10-24 gmungocJAL-2738 update spike branch with latest commit | commitdiff
2017-10-24 gmungocMerge branch 'develop' into features/JAL-1793VCF; lambd... commit | commitdiff
2017-10-20 gmungocPush 1793 latest to spike branch commit | commitdiff
2017-10-19 gmungocJAL-2755 find gene loci for fetched xrefs where possible commit | commitdiff
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-09-26 kiramtJAL-2674 more List<int[]> -> HiddenColumns copy changes commit | commitdiff
2017-09-26 kiramtJAL-2674 Changes to pasting commit | commitdiff
2017-09-22 gmungocJAL-2738 correct handling of reverse strand genes commit | commitdiff
2017-09-21 gmungocJAL-2738 PoC of Load VCF file on to gene sequence commit | commitdiff
2017-09-12 gmungocJAL-2727 ensure ViewportRanges (and gapcounts) are... commit | commitdiff
2017-09-01 gmungocJAL-2488 remove finalize methods commit | commitdiff
2017-08-29 Jim ProcterJAL-2698 spawn a thread to test for and raise auto... commit | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-08-09 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff
2017-08-07 Jim ProcterMerge branch 'bug/JAL-2592userDefinedScheme' into develop commit | commitdiff
2017-08-02 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff
2017-07-28 kiramtJAL-2632 Added paintAlignment(true) to show cols code commit | commitdiff
2017-07-24 gmungocspike branch updated from latest features/JAL-2446 commit | commitdiff
2017-07-19 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff
2017-07-04 gmungocJAL-147 remove redundant calls to update overview panel commit | commitdiff
2017-07-04 gmungocJAL-2608 tidy up OverviewPanel when closed commit | commitdiff
2017-06-29 gmungocJAL-147 improved wrapped scrolling (including Overview... commit | commitdiff
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff
2017-06-26 gmungocJAL-1858 ensure full redraw on 'remove all selections' commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-06-09 gmungocJAL-2592 distinguish "User Defined" (scheme name) from... bug/JAL-2592userDefinedScheme commit | commitdiff
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea... commit | commitdiff
2017-06-07 kiramtJAL-2591 Further refactoring (still incomplete) commit | commitdiff
2017-06-07 kiramtJAL-2591 More refactoring (incomplete) commit | commitdiff
2017-06-07 kiramtJAL-2591 More rationalising of hiddencols commit | commitdiff
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage commit | commitdiff
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2536' into develop commit | commitdiff
2017-05-16 kiramtJAL-2536 Overview window sizing not subject to min... bug/JAL-2536 commit | commitdiff
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... commit | commitdiff
2017-05-11 kiramtJAL-2491 Unit tests and updates commit | commitdiff
2017-05-08 gmungocJAL-1632 i18n for warning messages commit | commitdiff
2017-05-08 kiramtJAL-2491 Started moving other scrolling fns into viewpo... commit | commitdiff
2017-05-05 kiramtMerge remote-tracking branch commit | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges commit | commitdiff
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside... commit | commitdiff
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop commit | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... commit | commitdiff
2017-04-12 gmungocJAL-1632 removed check for aligned sequences for Tree... commit | commitdiff
2017-04-12 gmungocJAL-1632 one PCA/Tree per panel, closed when panel... commit | commitdiff
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff
2017-04-05 gmungocJAL-2361 simplify constructors, select unsaved but... commit | commitdiff
2017-03-31 gmungocMerge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView commit | commitdiff
2017-03-30 gmungocJAL-1608 leave Create Group, Remove Group menu items... commit | commitdiff
2017-03-29 gmungocMerge branch 'develop' into bug/JAL-1608createGroups commit | commitdiff
2017-03-24 gmungocJAL-1632 TreeChooser renamed CalculationChooser, text... commit | commitdiff
2017-03-24 gmungocJAL-838 move two callers off Comparison.PID and depreca... commit | commitdiff
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code commit | commitdiff
2017-03-15 gmungocJAL-2431 show cDNA consensus after New View in split... commit | commitdiff
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private... commit | commitdiff
2017-02-27 gmungocJAL-1632 similarity options on TreeChooser panel affect... commit | commitdiff
2017-02-27 gmungocJAL-1632 refactored NJTree constructor to include Simil... commit | commitdiff
2017-02-23 gmungocJAL-2403 JAL-1483 changes to ScoreModelI hierarchy... commit | commitdiff
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... commit | commitdiff
2017-02-17 gmungocJAL-2423 refactored method to build panel title for... commit | commitdiff
2017-02-14 gmungocParsing moved to (new) ScoreMatrixFile, drag and drop... commit | commitdiff
2017-02-13 gmungocJAL-1632 first cut of Tree chooser dialog and ScoreMode... commit | commitdiff
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