| 2018-05-28 |
gmungoc | Merge remote-tracking branch 'origin/releases/Release_2... |
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| 2018-05-23 |
gmungoc | JAL-2993 AlignFrame listen for keystrokes in OverviewPanel |
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| 2018-05-09 |
gmungoc | JAL-2984 add pdb as sequence(s) if associate structure... |
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| 2018-03-16 |
gmungoc | Merge branch 'bug/JAL-2865removeGC' into develop |
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| 2018-03-07 |
Jim Procter | Merge branch 'releases/Release_2_10_4_Branch' into... |
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| 2018-02-27 |
Jim Procter | Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104 |
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| 2018-02-20 |
Jim Procter | Merge branch 'releases/Release_2_10_4_Branch' into... |
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| 2018-02-13 |
Jim Procter | JAL-2781 refactor ‘trim retrieved sequence’ preference... |
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| 2018-01-15 |
kiramt | JAL-2759 Refactor of hideInsertionsFor after review |
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| 2018-01-10 |
gmungoc | JAL-2865 unhelpful System.gc() calls removed bug/JAL-2865removeGC |
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| 2018-01-10 |
gmungoc | JAL-1793 update spike branch to latest |
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| 2017-12-08 |
gmungoc | JAL-2843 refactor / tidy for feature filter input/output |
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| 2017-12-04 |
gmungoc | JAL-2850 JAL-1766 option to load contig sequence refere... |
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| 2017-11-08 |
kiramt | Merge branch 'develop' into feature/JAL-2759 |
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| 2017-10-27 |
gmungoc | JAL-1793 spike branch updated to latest |
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| 2017-10-27 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF |
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| 2017-10-26 |
Jim Procter | Merge branch 'feature/JAL-2488finalize' into develop |
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| 2017-10-26 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF |
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| 2017-10-25 |
Jim Procter | Merge branch 'bug/JAL-2727closeAllFreeMemory' into... |
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| 2017-10-24 |
gmungoc | JAL-2738 update spike branch with latest |
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| 2017-10-24 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF; lambd... |
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| 2017-10-20 |
gmungoc | Push 1793 latest to spike branch |
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| 2017-10-19 |
gmungoc | JAL-2755 find gene loci for fetched xrefs where possible |
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| 2017-10-12 |
Jim Procter | JAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview |
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| 2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
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| 2017-09-26 |
kiramt | JAL-2674 more List<int[]> -> HiddenColumns copy changes |
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| 2017-09-26 |
kiramt | JAL-2674 Changes to pasting |
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| 2017-09-22 |
gmungoc | JAL-2738 correct handling of reverse strand genes |
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| 2017-09-21 |
gmungoc | JAL-2738 PoC of Load VCF file on to gene sequence |
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| 2017-09-12 |
gmungoc | JAL-2727 ensure ViewportRanges (and gapcounts) are... |
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| 2017-09-01 |
gmungoc | JAL-2488 remove finalize methods |
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| 2017-08-29 |
Jim Procter | JAL-2698 spawn a thread to test for and raise auto... |
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| 2017-08-21 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList |
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| 2017-08-16 |
Jim Procter | JAL-2418 source formatting |
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| 2017-08-09 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
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| 2017-08-07 |
Jim Procter | Merge branch 'bug/JAL-2592userDefinedScheme' into develop |
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| 2017-08-02 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
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| 2017-07-28 |
kiramt | JAL-2632 Added paintAlignment(true) to show cols code |
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| 2017-07-24 |
gmungoc | spike branch updated from latest features/JAL-2446 |
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| 2017-07-19 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
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| 2017-07-04 |
gmungoc | JAL-147 remove redundant calls to update overview panel |
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| 2017-07-04 |
gmungoc | JAL-2608 tidy up OverviewPanel when closed |
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| 2017-06-29 |
gmungoc | JAL-147 improved wrapped scrolling (including Overview... |
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| 2017-06-27 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
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| 2017-06-26 |
gmungoc | JAL-1858 ensure full redraw on 'remove all selections' |
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| 2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
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| 2017-06-09 |
gmungoc | JAL-2592 distinguish "User Defined" (scheme name) from... bug/JAL-2592userDefinedScheme |
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| 2017-06-08 |
kiramt | JAL-2591 Refactor HiddenColumns to use ArrayList instea... |
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| 2017-06-07 |
kiramt | JAL-2591 Further refactoring (still incomplete) |
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| 2017-06-07 |
kiramt | JAL-2591 More refactoring (incomplete) |
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| 2017-06-07 |
kiramt | JAL-2591 More rationalising of hiddencols |
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| 2017-06-07 |
kiramt | JAL-2591 simplifying hidden columns usage |
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| 2017-05-29 |
Jim Procter | Merge branch 'bug/JAL-2536' into develop |
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| 2017-05-16 |
kiramt | JAL-2536 Overview window sizing not subject to min... bug/JAL-2536 |
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| 2017-05-15 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
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| 2017-05-12 |
Jim Procter | Merge branch 'features/JAL-2388OverviewWindow' into... |
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| 2017-05-11 |
kiramt | JAL-2491 Unit tests and updates |
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| 2017-05-08 |
gmungoc | JAL-1632 i18n for warning messages |
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| 2017-05-08 |
kiramt | JAL-2491 Started moving other scrolling fns into viewpo... |
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| 2017-05-05 |
kiramt | Merge remote-tracking branch |
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| 2017-05-05 |
kiramt | Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges |
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| 2017-05-02 |
gmungoc | JAL-2499 JAL-2403 push 'configure for view' inside... |
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| 2017-04-25 |
kiramt | JAL-2388 Working hidden regions hide/show in desktop |
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| 2017-04-24 |
kiramt | JAL-2388 Hidden cols separated from column selection... |
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| 2017-04-12 |
gmungoc | JAL-1632 removed check for aligned sequences for Tree... |
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| 2017-04-12 |
gmungoc | JAL-1632 one PCA/Tree per panel, closed when panel... |
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| 2017-04-07 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
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| 2017-04-05 |
gmungoc | JAL-2361 simplify constructors, select unsaved but... |
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| 2017-03-31 |
gmungoc | Merge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView |
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| 2017-03-30 |
gmungoc | JAL-1608 leave Create Group, Remove Group menu items... |
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| 2017-03-29 |
gmungoc | Merge branch 'develop' into bug/JAL-1608createGroups |
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| 2017-03-24 |
gmungoc | JAL-1632 TreeChooser renamed CalculationChooser, text... |
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| 2017-03-24 |
gmungoc | JAL-838 move two callers off Comparison.PID and depreca... |
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| 2017-03-23 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
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| 2017-03-16 |
kiramt | JAL-2388 Applied ViewportRanges to code |
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| 2017-03-15 |
gmungoc | JAL-2431 show cDNA consensus after New View in split... |
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| 2017-02-27 |
kiramt | JAL-2388 Make startRes,startSeq,endRes,endSeq private... |
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| 2017-02-27 |
gmungoc | JAL-1632 similarity options on TreeChooser panel affect... |
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| 2017-02-27 |
gmungoc | JAL-1632 refactored NJTree constructor to include Simil... |
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| 2017-02-23 |
gmungoc | JAL-2403 JAL-1483 changes to ScoreModelI hierarchy... |
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| 2017-02-20 |
gmungoc | JAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... |
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| 2017-02-17 |
gmungoc | JAL-2423 refactored method to build panel title for... |
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| 2017-02-14 |
gmungoc | Parsing moved to (new) ScoreMatrixFile, drag and drop... |
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| 2017-02-13 |
gmungoc | JAL-1632 first cut of Tree chooser dialog and ScoreMode... |
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| 2017-02-09 |
gmungoc | JAL-1608 menu entry text; enable/disable Create/Remove... |
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| 2017-01-31 |
gmungoc | JAL-2371 rename global/viewportColourScheme to residueS... |
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| 2017-01-31 |
gmungoc | JAL-2385 more tests/bug fixes mostly for gui.SliderPane... |
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| 2017-01-23 |
gmungoc | JAL-2386 unit tests for change colour (and minor refact... |
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| 2017-01-23 |
gmungoc | JAL-2386 simplify changeColour (doesn't change colour... |
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| 2017-01-20 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
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| 2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
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| 2017-01-19 |
gmungoc | JAL-2383 restore PID colour threshold from project... |
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| 2017-01-17 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
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| 2017-01-17 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
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| 2017-01-11 |
gmungoc | JAL-2344 FileFormats singleton for formats, FileFormatI... |
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| 2017-01-04 |
gmungoc | JAL-2371 CollectionColourScheme wraps ColourSchemeI |
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| 2016-12-22 |
gmungoc | JAL-2360 structure viewers now using ColourMenuHelper... |
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| 2016-12-21 |
gmungoc | JAL-2360 ColourMenuHelper now builds and selects items... |
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| 2016-12-20 |
gmungoc | JAL-2360 testRegisterColourScheme to demonstrate a... |
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| 2016-12-20 |
gmungoc | JAL-2360 ColourSchemes holds configured schemes, AlignF... |
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