| 2006-11-06 |
amwaterhouse | Only recalc consensus for start to end of group |
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| 2006-11-06 |
amwaterhouse | accelerators, save menu item |
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| 2006-11-03 |
amwaterhouse | Alignpanel is not new if copied from j2xml |
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| 2006-11-03 |
amwaterhouse | Use Jalview2XML to copy AlignmentPanel |
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| 2006-11-02 |
amwaterhouse | selected states set in updateMenusFromViewport |
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| 2006-10-27 |
amwaterhouse | PaintRefresher can calculate seqs added or removed |
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| 2006-10-26 |
amwaterhouse | Only adds history item if size>0 |
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| 2006-10-26 |
amwaterhouse | Dont readd the undo |
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| 2006-10-26 |
amwaterhouse | remove gaps size range |
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| 2006-10-25 |
amwaterhouse | viewport.hasHiddenColumns updated after undo/redo performed |
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| 2006-10-24 |
amwaterhouse | HistoryItem replaced by CommandI |
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| 2006-10-18 |
amwaterhouse | No longer a FeatureListener |
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| 2006-10-12 |
amwaterhouse | If conservation is null, disable Blosum62 and conservat... |
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| 2006-10-10 |
amwaterhouse | No need to find index when deleting |
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| 2006-10-10 |
amwaterhouse | Consensus and conservation updated in threads |
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| 2006-10-09 |
jprocter | imported Vamsas bindings and alpha vamsas client code... |
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| 2006-10-06 |
jprocter | Added filter so that input to a JPred job is *solely... |
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| 2006-10-06 |
amwaterhouse | AAFrequency optimized |
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| 2006-10-05 |
amwaterhouse | Multiple Views |
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| 2006-09-27 |
jprocter | fixed tree building exception when one residue or a... |
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| 2006-08-29 |
amwaterhouse | jnetfile can be loaded onto alignment |
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| 2006-08-21 |
amwaterhouse | header updated |
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| 2006-08-21 |
jprocter | Refactored Jnet and added hidden columns support. |
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| 2006-08-17 |
jprocter | moved visible sub-alignment extraction and update from... |
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| 2006-08-16 |
amwaterhouse | Fire alignment changed if seqs hidden / revealed |
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| 2006-08-15 |
amwaterhouse | Setselectiongroup null on hide |
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| 2006-08-10 |
amwaterhouse | Only add 1 feature settings table |
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| 2006-08-10 |
amwaterhouse | Invert column selection |
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| 2006-08-09 |
amwaterhouse | Null hidden cols check |
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| 2006-08-04 |
jprocter | recover original data for tree and pca as alignment... |
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| 2006-07-28 |
amwaterhouse | Remove system.out |
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| 2006-07-27 |
amwaterhouse | seq size cant be less than 2 for tree |
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| 2006-07-26 |
amwaterhouse | back to org.biojava |
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| 2006-07-26 |
amwaterhouse | Column hide/show updated |
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| 2006-07-25 |
amwaterhouse | ColumnSelection moved to datamodel |
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| 2006-07-25 |
amwaterhouse | Repaint |
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| 2006-07-25 |
amwaterhouse | jalview.biojava |
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| 2006-07-25 |
amwaterhouse | FileLoader replaces paste when Dropping files |
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| 2006-07-21 |
amwaterhouse | getViewAsString can ignore sequenceGroup |
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| 2006-07-21 |
amwaterhouse | Show hide cols and rows |
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| 2006-07-19 |
amwaterhouse | Save output use whole alignment |
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| 2006-07-19 |
amwaterhouse | Copy works with selection area |
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| 2006-07-18 |
amwaterhouse | Use selection area with hidden columns in calculations |
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| 2006-07-13 |
amwaterhouse | DAS feature retrieval updated |
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| 2006-07-12 |
amwaterhouse | sequences are private in SequenceGroup |
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| 2006-07-07 |
amwaterhouse | changeColour is public |
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| 2006-06-23 |
amwaterhouse | Parse HTML links from jalview features file |
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| 2006-06-23 |
amwaterhouse | No need for repaint |
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| 2006-06-22 |
amwaterhouse | Fetch DBRefs |
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| 2006-06-15 |
amwaterhouse | Correct citation |
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| 2006-06-09 |
amwaterhouse | Feature and annotation parsing moved to io |
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| 2006-06-07 |
amwaterhouse | Wrap alignment added to preferences |
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| 2006-06-07 |
amwaterhouse | new DasSequenceFetcher |
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| 2006-05-17 |
amwaterhouse | Restrict annotation panel to 50% window on load |
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| 2006-05-12 |
amwaterhouse | pass viewport to fileloader, as we need to fireproperty... |
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| 2006-05-11 |
amwaterhouse | Recently loaded files, urls, append sequences to Alignment |
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| 2006-05-10 |
amwaterhouse | Copy and paste of annotations with seqrefs |
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| 2006-04-28 |
amwaterhouse | If autoCalculate selected, recalculate immediately |
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| 2006-04-19 |
amwaterhouse | Multiple views, alignpanels not being used |
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| 2006-04-19 |
amwaterhouse | Alignment might not have any annotations |
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| 2006-04-06 |
amwaterhouse | Hide ref to HiddenRegion |
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| 2006-04-06 |
amwaterhouse | Must copy feature settings from one frame to another... |
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| 2006-04-05 |
amwaterhouse | Padgap history |
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| 2006-04-04 |
amwaterhouse | loadDataFile is public |
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| 2006-04-04 |
amwaterhouse | Autocalculate consensus |
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| 2006-03-24 |
amwaterhouse | Load data file added |
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| 2006-03-16 |
amwaterhouse | historyItem.restore |
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| 2006-03-08 |
amwaterhouse | IdentifyFile should not be static |
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| 2006-02-24 |
amwaterhouse | Cannot delete residues |
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| 2006-02-16 |
amwaterhouse | translate cDNA adjusted |
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| 2006-02-16 |
amwaterhouse | Read startgroup and endgroup in features file |
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| 2006-02-15 |
amwaterhouse | Dont use FeatureFetcher if nucleotide |
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| 2006-02-13 |
amwaterhouse | Parsing features file - dont adjust for alignment position |
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| 2006-02-09 |
amwaterhouse | New implementation for holding search results |
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| 2006-02-08 |
amwaterhouse | Copy dataset annotations for paste(this) |
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| 2006-02-03 |
amwaterhouse | Reading features files readded as ref to FeatureRendere... |
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| 2006-01-30 |
amwaterhouse | Drop annotations onto alignment |
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| 2006-01-11 |
jprocter | refactored Alignframe padGaps code to Alignment and... |
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| 2005-12-22 |
amwaterhouse | Remove import |
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| 2005-12-08 |
amwaterhouse | If dataset seq exists for paste to existing alignment... |
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| 2005-12-06 |
amwaterhouse | Add features to dataset |
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| 2005-12-06 |
amwaterhouse | After merge |
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| 2005-10-03 |
amwaterhouse | Remove development code |
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| 2005-09-30 |
amwaterhouse | Remove redundancy in Eclipse |
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| 2005-09-22 |
amwaterhouse | Create instance of FormatAdapter |
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| 2005-09-22 |
amwaterhouse | If Mac user hasnt selected file format, give warning |
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| 2005-09-21 |
amwaterhouse | Sequences must be aligned before PCA |
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| 2005-09-20 |
amwaterhouse | PCAPanel just requires viewport |
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| 2005-09-19 |
amwaterhouse | Dont add ServiceListeners if desktop is null |
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| 2005-09-15 |
amwaterhouse | remove system.out |
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| 2005-09-14 |
amwaterhouse | Copy and paste uses FASTA format |
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| 2005-09-14 |
amwaterhouse | PCA is in outofmemory try-catch |
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| 2005-09-12 |
amwaterhouse | Remove gaps in regions, not char by char |
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| 2005-09-12 |
amwaterhouse | Update overview in alignmentChanged |
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| 2005-09-08 |
amwaterhouse | Move tree property change to treePanel |
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| 2005-09-08 |
amwaterhouse | If no consensus, disable certain colour options |
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| 2005-09-01 |
amwaterhouse | firePropertyChange if sequences deleted |
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| 2005-09-01 |
amwaterhouse | Use propertyListener for alignment edits |
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| 2005-08-30 |
amwaterhouse | Update colours after remove left, cut, paste |
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| 2005-08-29 |
amwaterhouse | Reset all colour schemes after gaps removed |
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| next |
git://source.jalview.org / jalview.git / history