JAL-4125 Move confirmation of closing external viewer windows into the quit handler...
[jalview.git] / src / jalview / gui / AlignViewport.java
2011-07-31 janengelhardtJAL-885; StructureConservation row is displayed at...
2011-07-29 janengelhardtJAL-885; Implementation of StructureFrequency.java...
2011-07-09 jprocterrefactored from PopupMenu (for JAL-860)
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager...
2011-02-18 jprocterJAL-574
2011-02-04 jprocterjavadoc
2011-01-18 jprocterrefactored VamsasListener to allow the source of the...
2010-12-09 jprocterrefactored and added methods for getting richer Alignme...
2010-11-12 jprocterpatch for JAL-699 so conservation/consensus threads...
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-08-20 jprocteravoid race condition by setting sequence logo flag...
2010-06-11 jprocterpatched for JAL-531 - only display full symbol distribu...
2010-06-08 jprocterfollowSelections flag now set via user preferences...
2010-04-30 jprocterjalview 2.5 release banner
2010-04-29 jprocternew selection manipulation method
2010-04-14 jprocterprofile visualizations are now logos
2010-04-05 jprocterjavadoc
2010-03-30 jproctergroup autoannotation and consensus display settings
2009-10-14 jprocterquick fix for nullpointer in column selection when...
2009-08-21 jprocterviewport setting for displaying sequence logos
2009-07-24 jprocterrefactored conservation thread, added showgroupannotati...
2009-06-08 jprocterapply gpl development license
2009-03-17 jproctersortbytree view setting and action added - setting...
2009-02-24 jprocterbugfix for occasional nullpointer exceptions when selec...
2009-02-06 jproctershowUnconserved view and group setting
2009-01-09 jprocterhack to completely disable calculation of consensus...
2008-12-19 jprocternew sort by length method, justify edit menu entries...
2008-11-12 jprocterselection sending and receiving, autoscrolling to highl...
2008-09-08 jprocterview settings in view submenu and user preferences...
2008-09-04 jproctermerge from 2_4_Release branch
2008-07-18 jprocterSequence label colour stored for each sequence group
2008-04-21 jprocteradded centre annotation labels menu entry (and commente...
2007-10-31 jprocternullpointer bug fix on consensus thread
2007-10-04 jprocterrefactored invertColumnSelection as an object method
2007-09-25 jprocterprimitive methods for getting current undo/redo state...
2007-06-17 jprocterenable mouseover between DNA coding regions and transla...
2007-05-03 amwaterhouseoptimize repaints
2007-05-02 jproctercopy only the sequence associated alignment annotation...
2007-04-23 jprocterdistinct methods for getting references to selected...
2007-04-18 amwaterhousehastext = false
2007-04-18 amwaterhouseQuality does not have text
2007-03-19 jprocterconvenience method to get visible selected region.
2007-02-27 amwaterhouseUse paintAlignment
2007-02-07 amwaterhouseFormatting
2007-01-29 amwaterhouseID_ITALICS option in preferences
2007-01-24 amwaterhouseConservation etc have autoCalculated flag set true
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport
2006-12-05 amwaterhouseSequence is char []
2006-11-24 amwaterhouseInvert col sel with hidden cols bug fixed
2006-11-21 amwaterhouseRightAlign ids from prefs
2006-11-15 amwaterhouseright align ids
2006-11-13 amwaterhousesequence colours and text colours added
2006-11-07 amwaterhouseTidy up group size after alignmentChanged
2006-11-02 amwaterhouseHistory is per viewport
2006-10-30 amwaterhouseconservation lock
2006-10-27 amwaterhouseRemove consensus annotation if out of memory
2006-10-27 amwaterhouseupdatingConsensus, updatingConservation is static ...
2006-10-27 amwaterhouseReset colour schemes and alignmentChanged moved to...
2006-10-26 amwaterhouseshowConservation, quality, identity not used
2006-10-25 amwaterhouseReturn if negative width, ie alignment deleted
2006-10-18 amwaterhouseset conserve and quality null if outofmemory
2006-10-12 amwaterhouseshowQuality may be updated during archive file load
2006-10-10 amwaterhouseCalculate alWidth earlier
2006-10-10 amwaterhouseMust repaint whole alignPanel
2006-10-10 amwaterhouseConsensus and conservation updated in threads
2006-10-09 jprocterset firstColumn property for an alignmentView object.
2006-10-06 amwaterhouseAAFrequency optimized
2006-10-05 amwaterhouseMultiple Views
2006-09-27 jprocterfixed tree building exception when one residue or a...
2006-09-12 amwaterhousehideSequence hide all before recalc consensus
2006-09-07 jprocteradded copy consensus sequence to consensus annotation...
2006-08-21 amwaterhouseheader updated
2006-08-17 amwaterhouseHold onto selected region when hiding all columns only
2006-08-17 amwaterhouseDont set group null hideCOls
2006-08-16 amwaterhouseFire alignment changed if seqs hidden / revealed
2006-08-15 amwaterhouseSelect revealed seqs
2006-08-10 amwaterhouseInvert column selection
2006-08-04 jprocterrecover original data for tree and pca as alignment...
2006-07-28 amwaterhousegetIndex replaced with findSeq in seqPanel
2006-07-26 jprocterImplemented CIGAR representation of an Alignment view...
2006-07-26 amwaterhouseColumn hide/show updated
2006-07-25 amwaterhouseColumnSelection moved to datamodel
2006-07-21 amwaterhousegetViewAsString can ignore sequenceGroup
2006-07-21 amwaterhouseshow hide stuff moved from columnSelection
2006-07-18 amwaterhouseUse selection area with hidden columns in calculations
2006-07-12 amwaterhousesequences are private in SequenceGroup
2006-04-28 amwaterhousevalidCharWidth moved to viewport
2006-04-13 amwaterhouseshowInternalMessage jdk1.5 bug
2006-04-07 amwaterhousepadGaps set in preferences
2006-04-07 amwaterhouseAutocalculate consensus set in preferences
2006-04-04 amwaterhouseAutocalculate consensus
2006-03-24 amwaterhouseCursoMode added
2006-03-16 amwaterhouseHideSequences
2006-02-24 amwaterhouseFeatures added
2006-01-30 amwaterhouseAnti alias flag
2005-12-22 amwaterhouseAnnotations.Graph can be bargraph, linegraph
2005-12-06 amwaterhouseAfter merge
2005-09-22 amwaterhouseDont calculate conservation for nucleotides
2005-09-22 amwaterhouseWrap alignment with annotations
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