JAL-2668 fix broken factory method for colour scheme
[jalview.git] / src / jalview / gui / AlignmentPanel.java
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into...
2017-10-24 Jim ProcterMerge branch 'features/JAL-2608closeOverview' into...
2017-10-24 gmungocJAL-2738 update spike branch with latest
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop
2017-10-23 Jim ProcterJAL-2609 remove unused AlignPanel.fastPaint flag and...
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2739' into develop
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-22 kiramtJAL-2739 Fix ported to 2.10.3
2017-09-15 gmungocJAL-2728 limit divider to ensure seqs visible (wip!)
2017-09-13 gmungocJAL-2727 null additional references on close
2017-09-12 gmungocJAL-2727 ensure ViewportRanges (and gapcounts) are...
2017-09-07 gmungocJAL-2511 invalidate scale panel holder on font change...
2017-09-07 gmungocJAL-2511 invalidate scale panel holder on font change... bug/JAL-2511idAlignment
2017-09-06 Jim ProcterJAL-2587 makes sure idWidthAdjuster is resized when...
2017-09-06 Jim ProcterJAL-2587 makes sure idWidthAdjuster is resized when...
2017-09-05 Jim ProcterMerge branch 'master' into portforward/JAL-2675_2102b1t...
2017-08-29 kiramtJAL-2665 ported fix to 2.10.3. Doesn't work.
2017-08-29 kiramtJAL-2665 Corrected to draw selections for wrapped printing
2017-08-28 gmungocMerge branch 'bug/JAL-2687concurrentModification' into...
2017-08-28 gmungocJAL-2608 close any Overview when alignment view is...
2017-08-28 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-08-28 kiramtMerge remote-tracking branch 'origin/releases/Release_2...
2017-08-28 kiramtJAL-2665 Changes for review comments; printing with... bug/JAL-2665
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-07-24 gmungocspike branch updated from latest features/JAL-2446
2017-07-19 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-07-18 gmungocJAL-147 don't scroll up beyond startRes = 0 bug/JAL-147scrollWrappedView
2017-07-18 gmungocJAL-147 corrected calculation of vertical scroll positi...
2017-07-06 gmungocJAL-1858 fast paint wrapped highlights unless view...
2017-07-03 gmungocJAL-147 ViewportRanges calculate wrapped vertical scrol...
2017-06-29 gmungocJAL-147 improved wrapped scrolling (including Overview...
2017-06-27 gmungocJAL-147 scroll wrapped panel by one width's worth at...
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-06-02 gmungocMerge branch 'features/JAL-2446NCList' into features...
2017-06-01 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-01 gmungocJAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn
2017-05-31 gmungocJAL-2574 preparation for Sequence.findFeatures(col1...
2017-05-30 kiramtJAL-2573 Fixes for alignment < viewport width, and... JAL-2571
2017-05-29 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-18 gmungocJAL-2490 lookup features at each column position
2017-05-18 gmungocJAL-2543 html-encode quote characters in feature descri...
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-05-15 kiramtJAL-2491 Tidies
2017-05-12 kiramtJAL-2491 Renamed comp scrolling flag for consistency...
2017-05-12 kiramtJAL-2491 Tweaks for applet
2017-05-11 kiramtJAL-2491 Unit tests and updates
2017-05-09 kiramtJAL-2491 Tidies and more refactoring
2017-05-09 kiramtJAL-2491 Resolved highlighting and initialisation problems
2017-05-08 kiramtJAL-2491 Started moving other scrolling fns into viewpo...
2017-05-05 kiramtJAL-2491 Scrolling and interaction with overview/find...
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-05-05 kiramtJAL-2491 More working split panel + new scrolling
2017-05-03 kiramtJAL-2491 Tidies
2017-05-03 kiramtJAL-2491 Wrapped panel scrolling
2017-05-03 kiramtJAL-2491 sort of working overview/find interaction...
2017-05-02 Jim ProcterJAL-1632 validate CalculationChooser when selection...
2017-05-02 kiramtJAL-2491 first addition of new event
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-04-12 gmungocJAL-1632 one PCA/Tree per panel, closed when panel...
2017-03-31 gmungocMerge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code
2017-03-15 gmungocJAL-2431 show cDNA consensus after New View in split...
2017-03-14 kiramtJAL-2439 Fixes to out-by-one sequence indexing in gui...
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private...
2017-02-23 kiramtJAL-2388 Unit tests in progress
2017-02-21 kiramtMerge branch 'bug/JAL-2421overviewboxflicker' into
2017-02-21 kiramtJAL-2421 Unit test
2017-02-17 kiramtJAL-2388 Incomplete unit tests
2017-02-17 kiramtJAL-2421 Fix to alignment panel scroll values, and...
2016-11-23 Jim ProcterMerge branch 'bug/JAL-2323disulfideOverview' into develop
2016-11-22 tcofoegbuMerge branch 'bug/JAL-2277_refactorPrintUnwrapped'...
2016-11-22 gmungocJAL-2337 fix: only adjust once for scroll offset bug/JAL-2277_refactorPrintUnwrapped
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi...
2016-11-22 gmungocJAL-2277 refactored AlignmentPanel.printUnwrapped to...
2016-11-21 tcofoegbuJAL-2277 bug fix for mis-alligned graphics output for...
2016-11-17 gmungocJAL-2327 disulfide bond abstracted to SequenceFeature...
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap...
2016-11-04 gmungocJAL-966 JAL-1854 removed redundant methods / modifiers...
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-09-22 gmungocJAL-2216 explicitly null AnnotationPanel and Annotation...
2016-08-15 tcofoegbuJAL-1128 fix for truncated bottom boarder pixels in...
2016-08-15 tcofoegbuJAL-1128 fix for truncated bottom boarder pixels in...
2016-02-09 tcofoegbuJAL-1975 updated image export pipeline to produce more...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-10-02 gmungocJAL-1815 restore split frame geometry including horizon...
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-21 gmungocJAL-1799 update height of annotation labels to match...
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-03 Jim ProcterJAL-961 efficiency TODO: decouple overview updates...
2015-08-27 gmungocJAL-1830 refactored so no jalview.gui references from...
2015-08-17 gmungocJAL-1691 scan full width and depth of alignment for...
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