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[jalview.git] / src / jalview / gui / AlignmentPanel.java

2018-09-14	gmungoc	JAL-3116 parse EMBL XML with JAXB (todo: update unit...	blob \| commitdiff
2018-09-06	Jim Procter	JAL-2854 compute visible annotation panel height and...	blob \| commitdiff \| diff to current
2018-08-28	gmungoc	JAL-247 comment to clarify wrapped print algorithm	blob \| commitdiff \| diff to current
2018-08-28	gmungoc	JAL-247 print/export wrapped uses common code to draw...	blob \| commitdiff \| diff to current
2018-08-28	gmungoc	JAL-247 draw/print sequence ids now uses common code...	blob \| commitdiff \| diff to current
2018-05-25	gmungoc	JAL-2992 simpler heuristic for available height bug/JAL-2992panelHeight	blob \| commitdiff \| diff to current
2018-03-13	gmungoc	JAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)	blob \| commitdiff \| diff to current
2018-03-07	gmungoc	JAL-2913 use FIGURE_USERIDWIDTH for fixed id width...	blob \| commitdiff \| diff to current
2018-02-27	Jim Procter	Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104	blob \| commitdiff \| diff to current
2018-02-22	Jim Procter	Merge branch 'bug/JAL-2666' into releases/Release_2_10_...	blob \| commitdiff \| diff to current
2018-02-08	gmungoc	JAL-2666 basic initial fix for split screen scroll bug	blob \| commitdiff \| diff to current
2018-01-25	kiramt	JAL-2778 Reinstate id width adjuster	blob \| commitdiff \| diff to current
2018-01-15	kiramt	JAL-2759 Rename findColumnPosition and adjustForHiddenC...	blob \| commitdiff \| diff to current
2017-11-06	kiramt	JAL-2778 replace setScrollValues call in AlignmentPanel...	blob \| commitdiff \| diff to current
2017-11-03	kiramt	JAL-2778 Changed local repaint to alignment repaint...	blob \| commitdiff \| diff to current
2017-10-27	gmungoc	JAL-1793 spike branch updated to latest	blob \| commitdiff \| diff to current
2017-10-25	Jim Procter	Merge branch 'bug/JAL-2727closeAllFreeMemory' into...	blob \| commitdiff \| diff to current
2017-10-24	Jim Procter	Merge branch 'features/JAL-2608closeOverview' into...	blob \| commitdiff \| diff to current
2017-10-24	gmungoc	JAL-2738 update spike branch with latest	blob \| commitdiff \| diff to current
2017-10-23	Jim Procter	Merge branch 'bug/JAL-2609attemptedmerge' into develop	blob \| commitdiff \| diff to current
2017-10-23	Jim Procter	JAL-2609 remove unused AlignPanel.fastPaint flag and...	blob \| commitdiff \| diff to current
2017-10-23	Jim Procter	Merge branch 'bug/JAL-2739' into develop	blob \| commitdiff \| diff to current
2017-10-12	Jim Procter	JAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-09-22	kiramt	JAL-2739 Fix ported to 2.10.3	blob \| commitdiff \| diff to current
2017-09-15	gmungoc	JAL-2728 limit divider to ensure seqs visible (wip!)	blob \| commitdiff \| diff to current
2017-09-13	gmungoc	JAL-2727 null additional references on close	blob \| commitdiff \| diff to current
2017-09-12	gmungoc	JAL-2727 ensure ViewportRanges (and gapcounts) are...	blob \| commitdiff \| diff to current
2017-09-07	gmungoc	JAL-2511 invalidate scale panel holder on font change...	blob \| commitdiff \| diff to current
2017-09-07	gmungoc	JAL-2511 invalidate scale panel holder on font change... bug/JAL-2511idAlignment	blob \| commitdiff \| diff to current
2017-09-06	Jim Procter	JAL-2587 makes sure idWidthAdjuster is resized when...	blob \| commitdiff \| diff to current
2017-09-06	Jim Procter	JAL-2587 makes sure idWidthAdjuster is resized when...	blob \| commitdiff \| diff to current
2017-09-05	Jim Procter	Merge branch 'master' into portforward/JAL-2675_2102b1t...	blob \| commitdiff \| diff to current
2017-08-29	kiramt	JAL-2665 ported fix to 2.10.3. Doesn't work.	blob \| commitdiff \| diff to current
2017-08-29	kiramt	JAL-2665 Corrected to draw selections for wrapped printing	blob \| commitdiff \| diff to current
2017-08-28	gmungoc	Merge branch 'bug/JAL-2687concurrentModification' into...	blob \| commitdiff \| diff to current
2017-08-28	gmungoc	JAL-2608 close any Overview when alignment view is...	blob \| commitdiff \| diff to current
2017-08-28	kiramt	Merge remote-tracking branch 'origin/develop' into...	blob \| commitdiff \| diff to current
2017-08-28	kiramt	Merge remote-tracking branch 'origin/releases/Release_2...	blob \| commitdiff \| diff to current
2017-08-28	kiramt	JAL-2665 Changes for review comments; printing with... bug/JAL-2665	blob \| commitdiff \| diff to current
2017-08-21	gmungoc	Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-07-24	gmungoc	spike branch updated from latest features/JAL-2446	blob \| commitdiff \| diff to current
2017-07-19	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-07-18	gmungoc	JAL-147 don't scroll up beyond startRes = 0 bug/JAL-147scrollWrappedView	blob \| commitdiff \| diff to current
2017-07-18	gmungoc	JAL-147 corrected calculation of vertical scroll positi...	blob \| commitdiff \| diff to current
2017-07-06	gmungoc	JAL-1858 fast paint wrapped highlights unless view...	blob \| commitdiff \| diff to current
2017-07-03	gmungoc	JAL-147 ViewportRanges calculate wrapped vertical scrol...	blob \| commitdiff \| diff to current
2017-06-29	gmungoc	JAL-147 improved wrapped scrolling (including Overview...	blob \| commitdiff \| diff to current
2017-06-27	gmungoc	JAL-147 scroll wrapped panel by one width's worth at...	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-06-02	gmungoc	Merge branch 'features/JAL-2446NCList' into features...	blob \| commitdiff \| diff to current
2017-06-01	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-06-01	gmungoc	JAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn	blob \| commitdiff \| diff to current
2017-05-31	gmungoc	JAL-2574 preparation for Sequence.findFeatures(col1...	blob \| commitdiff \| diff to current
2017-05-30	kiramt	JAL-2573 Fixes for alignment < viewport width, and... JAL-2571	blob \| commitdiff \| diff to current
2017-05-29	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-05-18	gmungoc	JAL-2490 lookup features at each column position	blob \| commitdiff \| diff to current
2017-05-18	gmungoc	JAL-2543 html-encode quote characters in feature descri...	blob \| commitdiff \| diff to current
2017-05-15	kiramt	Merge remote-tracking branch 'origin/develop' into...	blob \| commitdiff \| diff to current
2017-05-15	kiramt	JAL-2491 Tidies	blob \| commitdiff \| diff to current
2017-05-12	kiramt	JAL-2491 Renamed comp scrolling flag for consistency...	blob \| commitdiff \| diff to current
2017-05-12	kiramt	JAL-2491 Tweaks for applet	blob \| commitdiff \| diff to current
2017-05-11	kiramt	JAL-2491 Unit tests and updates	blob \| commitdiff \| diff to current
2017-05-09	kiramt	JAL-2491 Tidies and more refactoring	blob \| commitdiff \| diff to current
2017-05-09	kiramt	JAL-2491 Resolved highlighting and initialisation problems	blob \| commitdiff \| diff to current
2017-05-08	kiramt	JAL-2491 Started moving other scrolling fns into viewpo...	blob \| commitdiff \| diff to current
2017-05-05	kiramt	JAL-2491 Scrolling and interaction with overview/find...	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges	blob \| commitdiff \| diff to current
2017-05-05	kiramt	JAL-2491 More working split panel + new scrolling	blob \| commitdiff \| diff to current
2017-05-03	kiramt	JAL-2491 Tidies	blob \| commitdiff \| diff to current
2017-05-03	kiramt	JAL-2491 Wrapped panel scrolling	blob \| commitdiff \| diff to current
2017-05-03	kiramt	JAL-2491 sort of working overview/find interaction...	blob \| commitdiff \| diff to current
2017-05-02	Jim Procter	JAL-1632 validate CalculationChooser when selection...	blob \| commitdiff \| diff to current
2017-05-02	kiramt	JAL-2491 first addition of new event	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Hidden cols separated from column selection...	blob \| commitdiff \| diff to current
2017-04-12	gmungoc	JAL-1632 one PCA/Tree per panel, closed when panel...	blob \| commitdiff \| diff to current
2017-03-31	gmungoc	Merge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView	blob \| commitdiff \| diff to current
2017-03-16	kiramt	JAL-2388 Applied ViewportRanges to code	blob \| commitdiff \| diff to current
2017-03-15	gmungoc	JAL-2431 show cDNA consensus after New View in split...	blob \| commitdiff \| diff to current
2017-03-14	kiramt	JAL-2439 Fixes to out-by-one sequence indexing in gui...	blob \| commitdiff \| diff to current
2017-02-27	kiramt	JAL-2388 Make startRes,startSeq,endRes,endSeq private...	blob \| commitdiff \| diff to current
2017-02-23	kiramt	JAL-2388 Unit tests in progress	blob \| commitdiff \| diff to current
2017-02-21	kiramt	Merge branch 'bug/JAL-2421overviewboxflicker' into	blob \| commitdiff \| diff to current
2017-02-21	kiramt	JAL-2421 Unit test	blob \| commitdiff \| diff to current
2017-02-17	kiramt	JAL-2388 Incomplete unit tests	blob \| commitdiff \| diff to current
2017-02-17	kiramt	JAL-2421 Fix to alignment panel scroll values, and...	blob \| commitdiff \| diff to current
2016-11-23	Jim Procter	Merge branch 'bug/JAL-2323disulfideOverview' into develop	blob \| commitdiff \| diff to current
2016-11-22	tcofoegbu	Merge branch 'bug/JAL-2277_refactorPrintUnwrapped'...	blob \| commitdiff \| diff to current
2016-11-22	gmungoc	JAL-2337 fix: only adjust once for scroll offset bug/JAL-2277_refactorPrintUnwrapped	blob \| commitdiff \| diff to current
2016-11-22	Jim Procter	Merge branch 'features/JAL-1738_JAL-345_selectionfromhi...	blob \| commitdiff \| diff to current
2016-11-22	gmungoc	JAL-2277 refactored AlignmentPanel.printUnwrapped to...	blob \| commitdiff \| diff to current
2016-11-21	tcofoegbu	JAL-2277 bug fix for mis-alligned graphics output for...	blob \| commitdiff \| diff to current
2016-11-17	gmungoc	JAL-2327 disulfide bond abstracted to SequenceFeature...	blob \| commitdiff \| diff to current
2016-11-11	tcofoegbu	JAL-2277 Refactored out duplicated method - printUnwrap...	blob \| commitdiff \| diff to current
2016-11-04	gmungoc	JAL-966 JAL-1854 removed redundant methods / modifiers...	blob \| commitdiff \| diff to current
2016-10-28	Jim Procter	JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
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