2009-06-12 |
jprocter | recover pdb from jalview-xml in vamsas doc |
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2009-06-08 |
jprocter | debug messages and graceful recovery when structure... |
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2009-03-31 |
jprocter | prototype for store/restore of feature colour gradient... |
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2009-02-06 |
jprocter | showUnconserved view and group setting |
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2008-12-15 |
jprocter | warning for failed parsing of newick strings |
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2008-11-12 |
jprocter | selection sending and receiving, autoscrolling to highl... |
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2008-09-04 |
jprocter | merge from 2_4_Release branch |
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2008-08-19 |
jprocter | beginning of fix for embl/cds/highlighting IO in https... |
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2008-05-12 |
jprocter | fixed Jalview project archive bug where alignment view... |
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2008-02-22 |
jprocter | sequenceId is a string, not an integer - allows generat... |
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2008-01-29 |
jprocter | flag to indicate if errors are raised as warning dialog... |
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2007-11-28 |
jprocter | bugfix |
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2007-11-12 |
jprocter | bugfix for occasional race condition causing exception... |
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2007-08-30 |
jprocter | *really* make sure database references are stored and... |
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2007-08-30 |
jprocter | ensure codon mappings and database references are merge... |
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2007-08-30 |
jprocter | store dataset references, sequence dataset ids, and... |
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2007-05-10 |
amwaterhouse | visibility setting |
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2007-05-10 |
amwaterhouse | Visible state of annotation |
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2007-05-07 |
amwaterhouse | Use id hash to add pdb mappings back to alignment |
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2007-05-04 |
amwaterhouse | Check bounds of loaded comp |
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2007-05-04 |
amwaterhouse | Rename AppJMol to AppJmol - also AppJmol works with... |
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2007-05-01 |
amwaterhouse | Can specify PDB chain to map sequence to - only used... |
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2007-05-01 |
amwaterhouse | Save seqset properties |
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2007-04-26 |
jprocter | use hasScore method to test presence of score in annota... |
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2007-04-26 |
amwaterhouse | check for null ss character |
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2007-04-25 |
jprocter | AlignmentAnnotation: added annotation score attribute... |
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2007-04-17 |
jprocter | pdb files are global to all alignments with new mapping... |
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2007-04-02 |
jprocter | feature group state and type order preference storage... |
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2007-03-26 |
amwaterhouse | Add seq mapping for multiple seq 2 pdbs |
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2007-03-22 |
amwaterhouse | Saves structures |
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2007-02-12 |
amwaterhouse | Hashtable for previously loaded pdb files |
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2007-02-07 |
amwaterhouse | Formatting |
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2007-01-31 |
amwaterhouse | Consensus, conservation, quality labels may have changed |
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2007-01-30 |
amwaterhouse | Check seqs in group exist in this alignment |
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2007-01-25 |
amwaterhouse | Annotations move when full alignment edited |
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2007-01-23 |
amwaterhouse | Hidden representatives moved from sequence to viewport |
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2006-12-21 |
amwaterhouse | remove unnecessary import |
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2006-12-05 |
amwaterhouse | Sequence is char [] |
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2006-11-30 |
amwaterhouse | Return true or false if file saved |
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2006-11-28 |
amwaterhouse | REmove system.out |
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2006-11-28 |
amwaterhouse | Loads PDB files from jar file, new views can open PDB... |
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2006-11-21 |
amwaterhouse | expanded views, j2xml use setinitialtabvisible, close... |
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2006-11-15 |
amwaterhouse | right align ids |
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2006-11-13 |
amwaterhouse | Save text colours |
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2006-11-09 |
amwaterhouse | close menu item true |
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2006-11-07 |
amwaterhouse | Dont load trees if copying Viewport |
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2006-11-03 |
amwaterhouse | Use Jalview2XML to copy AlignmentPanel |
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2006-11-02 |
amwaterhouse | Set menu state in alignFrame |
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2006-10-26 |
amwaterhouse | showConservation, quality, identity not used |
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2006-10-18 |
amwaterhouse | showqual, showcons never used |
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2006-10-06 |
amwaterhouse | AAFrequency optimized |
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2006-10-05 |
amwaterhouse | Multiple Views |
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2006-09-12 |
amwaterhouse | hideSequence hide all before recalc consensus |
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2006-08-30 |
amwaterhouse | User colours are case sensitive |
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2006-08-29 |
amwaterhouse | createMapping alreadyMapped |
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2006-08-22 |
jprocter | off by one bug in hiden column unmarshalling |
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2006-08-21 |
amwaterhouse | header updated |
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2006-08-17 |
amwaterhouse | OptionPanes invokeLater |
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2006-08-14 |
amwaterhouse | Stop loading must be before JOptionPane, 1.5 bug |
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2006-08-09 |
amwaterhouse | Must save all the feature settings |
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2006-08-09 |
amwaterhouse | Save links and scores and keyValues for features |
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2006-08-07 |
amwaterhouse | Set wrapped mode even if false |
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2006-07-27 |
amwaterhouse | Dont set pdb file if it doenst exist |
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2006-07-27 |
amwaterhouse | Readline instead of bit by bit |
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2006-07-26 |
amwaterhouse | Load and save PDB files |
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2006-07-21 |
amwaterhouse | Saves hidden seqs and DBRefs |
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2006-07-12 |
amwaterhouse | sequences are private in SequenceGroup |
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2006-06-14 |
amwaterhouse | Status is now in otherData of feature |
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2006-05-17 |
amwaterhouse | Restrict annotation panel to 50% window on load |
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2006-05-16 |
amwaterhouse | Save annotation colours, hideConsevation etc, graphGroups |
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2006-05-11 |
amwaterhouse | Typo |
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2006-05-10 |
amwaterhouse | saves and loads annotations with seqrefs |
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2006-04-05 |
amwaterhouse | Maintain feature order |
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2006-04-05 |
amwaterhouse | Save annotationColours |
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2006-04-05 |
amwaterhouse | Turn off validation for speed |
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2006-04-04 |
amwaterhouse | For archive only |
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2006-03-24 |
amwaterhouse | FeatureSettings bug fixed |
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2006-02-24 |
amwaterhouse | Features now an array |
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2006-02-16 |
amwaterhouse | Save featureGroup |
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2006-02-15 |
amwaterhouse | Saves and loads sequence description |
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2006-02-03 |
amwaterhouse | Save and load graph type |
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2005-12-22 |
amwaterhouse | Annotations.Graph can be bargraph, linegraph |
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2005-12-08 |
amwaterhouse | showAnnotation state loaded |
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2005-12-06 |
amwaterhouse | After merge |
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2005-09-20 |
amwaterhouse | New methods in treePanel |
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2005-09-14 |
amwaterhouse | Call methods in treeCanvas on init |
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2005-09-14 |
amwaterhouse | Use getTreeFont instead of getFont |
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2005-09-14 |
amwaterhouse | Save fonts for trees |
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2005-08-24 |
amwaterhouse | Bring trees to front |
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2005-08-23 |
amwaterhouse | Set size and location of frame before visible |
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2005-08-22 |
amwaterhouse | Checks for null colour in groups |
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2005-08-22 |
amwaterhouse | Conservation colour scheme is no more |
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2005-08-17 |
amwaterhouse | Conservation group colour saved |
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2005-08-17 |
amwaterhouse | No score colour scheme, group colours saved if conserva... |
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2005-08-15 |
amwaterhouse | IgnoreGapsConsensus |
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2005-08-03 |
amwaterhouse | Trees aren't save in headless state in this version |
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2005-08-02 |
amwaterhouse | Use font.getName, not font.getFontName |
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2005-07-11 |
amwaterhouse | Release and build date methods changed |
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2005-06-30 |
amwaterhouse | Formatting changes |
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2005-06-15 |
amwaterhouse | REmove commented out lines |
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