| 2012-07-01 |
jprocter | JAL-1117 alleviate lock starvation |
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| 2012-06-13 |
jprocter | JAL-1115 refactor base collection for Alignment from... |
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| 2012-06-13 |
jprocter | javatidy |
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| 2012-05-30 |
jprocter | updated schema to store and recover belowAlignment... |
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| 2012-05-30 |
jprocter | JAL-1114 - refactor methods handling Vectors and Hashta... |
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| 2012-03-01 |
jprocter | Merge branch 'Release_2_7_Branch' into develop |
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| 2012-02-12 |
Jim Procter | (JAL-1022) reverted to original strategy of escaping... |
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| 2012-02-12 |
Jim Procter | (JAL-1050) ensure all filenames passed in to the load... |
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| 2012-02-12 |
Jim Procter | (JAL-1025 JAL-1022) File based equivalence used to... |
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| 2012-02-12 |
Jim Procter | (JAL-1049) only store state reference for sequence... |
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| 2011-10-27 |
jprocter | (JAL-969) refactored alignmentViewport base class to... |
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| 2011-10-10 |
jprocter | update author list in license for (JAL-826) |
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| 2011-09-27 |
jprocter | apply version 2.7 copyright |
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| 2011-09-16 |
jprocter | JAL-747 - made warning message friendlier and more... |
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| 2011-09-14 |
jprocter | patch for NPE (not clear if NPE is evidence of deeper... |
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| 2011-08-15 |
jprocter | JAL-747 - warning dialog if Jalview can't resolve filen... |
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| 2011-05-17 |
jprocter | refactor to allow distinct StructureSelectionManager... |
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| 2011-04-25 |
jprocter | JAL-824 - patch to schema to allow jmol colouring state... |
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| 2011-04-22 |
jprocter | comments re JAL-823 legacy issue |
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| 2011-04-21 |
jprocter | save and recover graph height, visibility and row posit... |
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| 2011-02-18 |
jprocter | bugfixing for JAL-778 |
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| 2010-09-23 |
jprocter | apply jalview code style |
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| 2010-09-23 |
jprocter | Jalview 2.6 source licence |
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| 2010-09-22 |
jprocter | trap out of memory errors specifically associated with... |
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| 2010-09-08 |
jprocter | JAL-634 |
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| 2010-08-27 |
jprocter | revised sequence/structure binding so one structure... |
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| 2010-08-20 |
jprocter | avoid race condition by setting sequence logo flag... |
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| 2010-08-18 |
jprocter | thread safe construction of Jmol instance and hack... |
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| 2010-06-29 |
jprocter | jmol 12 patch - ensure we replace the correct filename... |
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| 2010-06-11 |
jprocter | patched for JAL-531 - only display full symbol distribu... |
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| 2010-06-06 |
jprocter | patch for JAL-542 |
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| 2010-06-03 |
jprocter | patch re JAL-554 |
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| 2010-06-01 |
jprocter | patches for # JAL-254 and JAL-548 |
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| 2010-04-30 |
jprocter | jalview 2.5 release banner |
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| 2010-04-14 |
jprocter | profile visualizations are now logos |
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| 2010-04-05 |
jprocter | Extend XML model for graduated feature colours, group... |
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| 2009-10-14 |
jprocter | quick fix for nullpointer in column selection when... |
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| 2009-10-13 |
jprocter | safer OOM handling when importing from XML |
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| 2009-06-12 |
jprocter | recover pdb from jalview-xml in vamsas doc |
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| 2009-06-08 |
jprocter | debug messages and graceful recovery when structure... |
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| 2009-03-31 |
jprocter | prototype for store/restore of feature colour gradient... |
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| 2009-02-06 |
jprocter | showUnconserved view and group setting |
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| 2008-12-15 |
jprocter | warning for failed parsing of newick strings |
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| 2008-11-12 |
jprocter | selection sending and receiving, autoscrolling to highl... |
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| 2008-09-04 |
jprocter | merge from 2_4_Release branch |
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| 2008-08-19 |
jprocter | beginning of fix for embl/cds/highlighting IO in https... |
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| 2008-05-12 |
jprocter | fixed Jalview project archive bug where alignment view... |
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| 2008-02-22 |
jprocter | sequenceId is a string, not an integer - allows generat... |
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| 2008-01-29 |
jprocter | flag to indicate if errors are raised as warning dialog... |
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| 2007-11-28 |
jprocter | bugfix |
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| 2007-11-12 |
jprocter | bugfix for occasional race condition causing exception... |
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| 2007-08-30 |
jprocter | *really* make sure database references are stored and... |
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| 2007-08-30 |
jprocter | ensure codon mappings and database references are merge... |
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| 2007-08-30 |
jprocter | store dataset references, sequence dataset ids, and... |
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| 2007-05-10 |
amwaterhouse | visibility setting |
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| 2007-05-10 |
amwaterhouse | Visible state of annotation |
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| 2007-05-07 |
amwaterhouse | Use id hash to add pdb mappings back to alignment |
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| 2007-05-04 |
amwaterhouse | Check bounds of loaded comp |
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| 2007-05-04 |
amwaterhouse | Rename AppJMol to AppJmol - also AppJmol works with... |
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| 2007-05-01 |
amwaterhouse | Can specify PDB chain to map sequence to - only used... |
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| 2007-05-01 |
amwaterhouse | Save seqset properties |
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| 2007-04-26 |
jprocter | use hasScore method to test presence of score in annota... |
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| 2007-04-26 |
amwaterhouse | check for null ss character |
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| 2007-04-25 |
jprocter | AlignmentAnnotation: added annotation score attribute... |
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| 2007-04-17 |
jprocter | pdb files are global to all alignments with new mapping... |
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| 2007-04-02 |
jprocter | feature group state and type order preference storage... |
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| 2007-03-26 |
amwaterhouse | Add seq mapping for multiple seq 2 pdbs |
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| 2007-03-22 |
amwaterhouse | Saves structures |
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| 2007-02-12 |
amwaterhouse | Hashtable for previously loaded pdb files |
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| 2007-02-07 |
amwaterhouse | Formatting |
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| 2007-01-31 |
amwaterhouse | Consensus, conservation, quality labels may have changed |
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| 2007-01-30 |
amwaterhouse | Check seqs in group exist in this alignment |
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| 2007-01-25 |
amwaterhouse | Annotations move when full alignment edited |
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| 2007-01-23 |
amwaterhouse | Hidden representatives moved from sequence to viewport |
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| 2006-12-21 |
amwaterhouse | remove unnecessary import |
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| 2006-12-05 |
amwaterhouse | Sequence is char [] |
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| 2006-11-30 |
amwaterhouse | Return true or false if file saved |
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| 2006-11-28 |
amwaterhouse | REmove system.out |
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| 2006-11-28 |
amwaterhouse | Loads PDB files from jar file, new views can open PDB... |
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| 2006-11-21 |
amwaterhouse | expanded views, j2xml use setinitialtabvisible, close... |
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| 2006-11-15 |
amwaterhouse | right align ids |
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| 2006-11-13 |
amwaterhouse | Save text colours |
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| 2006-11-09 |
amwaterhouse | close menu item true |
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| 2006-11-07 |
amwaterhouse | Dont load trees if copying Viewport |
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| 2006-11-03 |
amwaterhouse | Use Jalview2XML to copy AlignmentPanel |
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| 2006-11-02 |
amwaterhouse | Set menu state in alignFrame |
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| 2006-10-26 |
amwaterhouse | showConservation, quality, identity not used |
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| 2006-10-18 |
amwaterhouse | showqual, showcons never used |
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| 2006-10-06 |
amwaterhouse | AAFrequency optimized |
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| 2006-10-05 |
amwaterhouse | Multiple Views |
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| 2006-09-12 |
amwaterhouse | hideSequence hide all before recalc consensus |
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| 2006-08-30 |
amwaterhouse | User colours are case sensitive |
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| 2006-08-29 |
amwaterhouse | createMapping alreadyMapped |
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| 2006-08-22 |
jprocter | off by one bug in hiden column unmarshalling |
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| 2006-08-21 |
amwaterhouse | header updated |
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| 2006-08-17 |
amwaterhouse | OptionPanes invokeLater |
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| 2006-08-14 |
amwaterhouse | Stop loading must be before JOptionPane, 1.5 bug |
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| 2006-08-09 |
amwaterhouse | Must save all the feature settings |
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| 2006-08-09 |
amwaterhouse | Save links and scores and keyValues for features |
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| 2006-08-07 |
amwaterhouse | Set wrapped mode even if false |
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git://source.jalview.org / jalview.git / history