Merge branch 'JAL-3878_ws-overhaul-3' into with_ws_overhaul-3
[jalview.git] / src / jalview / gui / Preferences.java
2022-12-14 Jim ProcterMerge branch 'develop' into update_212_Dec_merge_with_2...
2022-12-13 Jim ProcterMerge branch 'alpha/origin_2022_JAL-3066_Jalview_212_sl...
2022-11-21 Jim ProcterMerge commit 'alpha/update_2_12_for_2_11_2_series_merge...
2022-03-08 Ben SoaresJAL-3103 Removed code and unused widgets for defaultBrowser
2022-03-08 Ben SoaresJAL-3103 Remove BrowserLauncher2 and use Desktop.browse...
2022-03-08 Ben SoaresJAL-3103 Put jalview.jar first in getdown for .properti...
2022-03-07 Ben SoaresJAL-3103 Switched to (a wrapper around) BrowserLauncher2
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework...
2022-01-27 Jim ProcterMerge branch 'bug/JAL-3633_read_proxy_settings_from_jal...
2021-11-03 Jim ProcterJAL-3915 remove RNAview opts from preferences. Still...
2021-10-01 Jim ProcterJAL-3616 explicit configure external viewer config
2021-09-15 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile...
2021-09-14 Ben SoaresJAL-2422 More helpful highlighting/user guidance of...
2021-07-22 Jim ProcterJAL-3848 enable slivka services dialog in JalviewJS
2021-03-19 Ben SoaresJAL-3503 Added a Startup tab in Preferences, with gui...
2020-12-14 Jim ProcterMerge branch 'Jalview-JS/develop' into merge_js_develop
2020-11-13 Ben SoaresJAL-3775 Eclipse re-formatting commit
2020-11-13 Ben SoaresJAL-3633 Apply (proxy) button enabled when needed
2020-11-13 Ben SoaresJAL-3633 Small changes to allow future fitting with...
2020-11-13 Ben SoaresJAL-3275 JAL-3633: JAL-3275 Turned Preferences into...
2020-11-13 Ben SoaresJAL-3633 Set proxy preferences before web calls in...
2020-11-13 Ben SoaresJAL-3633 Memory only proxy auth password storage. Open...
2020-11-12 Ben SoaresJAL-3633 Added Proxy Authentication credentials in...
2020-11-12 Ben SoaresJAL-3633 Remember system set proxy properties. Add...
2020-09-17 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile...
2020-07-09 Mateusz WarownyMerge branch 'feature/JAL-3686_slivka_client_js_update... alpha/merge_212_JalviewJS_2112
2020-06-04 gmungocJAL-3446 post-merge unit test fixes, formatting
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider...
2020-06-02 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider...
2020-06-02 BobHansonPreferences/StructureViewer fix
2020-06-02 BobHansonJAL-3446 JAL-3253 Preferences
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet Jalview.java
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet Cache applicationProperti...
2020-06-01 BobHansonJAL-3626 from JAL-3253-applet CalculationChooser
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet Preferences final static...
2020-05-24 Jim ProcterJAL-3407 redact Java 8 incompatible '<>' with anonymous...
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol
2020-05-18 Jim ProcterMerge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
2020-05-11 gmungocJAL-2422 JAL-3551 viewer text/variables generalised...
2020-04-23 Jim ProcterMerge branch 'develop' into alpha/JAL-3362_Jalview_212_...
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop
2020-03-13 gmungocJAL-3551 working proof of concept of Jalview driving...
2020-03-09 gmungocMerge branch 'develop' into feature/JAL-2422ChimeraX
2020-03-02 Jim ProcterJAL-3407 redact Java 8 incompatible '<>' with anonymous...
2020-02-19 Jim ProcterJAL-3538 anti-aliasing enabled by default
2020-02-04 MMWarownyJAL-3515 Build a WSPreferences page for Slivka services.
2020-01-31 gmungocJAL-2422 more responsive Chimera/X path prompts in...
2020-01-28 gmungocJAL-2422 ChimeraX added to Preferences
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge
2019-06-04 Jim ProcterMerge branch 'develop' into developtomchmmer
2019-05-27 Ben SoaresJAL-3141 Added HashMap types for Java 1.8 compatibility
2019-05-24 Ben SoaresJAL-3141 Reworked a lot of BackupFiles to allow the...
2019-04-03 hansonrreplacing @j2sNative with @j2sIgnore where appropriate...
2019-03-27 hansonrisJS cleanup
2019-03-15 gmungocMerge branch 'develop' into Jalview-JS/develop
2019-03-15 gmungocJAL-3203 Overview show hidden default false also in...
2019-03-13 gmungocMerge branch 'develop' into trialMerge
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
2019-01-24 Ben SoaresJAL-3141 New layout and wording of Backups Preferences...
2019-01-23 Ben SoaresJAL-3141 Added Presets options in the Backups Preferenc...
2019-01-21 hansonrisAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...
2019-01-20 Ben SoaresJAL-3141 Fixed example filenames in Preferences pane...
2019-01-20 Ben SoaresJAL-3141 Changed suffix position to after the extension...
2019-01-08 Ben SoaresJAL-3141 Made some suggested changes from code review
2018-11-05 Ben SoaresJAL-3141 couple of minor fixes for example files being...
2018-11-02 Ben SoaresJAL-3141 Tests now available and working, bringing...
2018-11-01 Ben SoaresJAL-3141 Preferences 'Backups' tab now fits. Moved...
2018-10-31 Ben SoaresJAL-3141 Preferences 'Backups' tab now working. Doesn...
2018-08-20 gmungocJAL-3084 force EPS output to "Text" for JalviewJS
2018-08-20 gmungocJAL-3084 hide startup file, Chimera, HTML/SVG, Web...
2018-07-23 Jim ProcterMerge branch 'features/mchmmer' into merge/wsinterfaces...
2018-07-17 gmungocJAL-3068 LineartOptions for EPS/HTML/SVG, new preferenc... task/JAL-3068lineartDialog
2018-07-10 gmungocJAL-3048 code reordered for JalviewJS compliance
2018-07-05 hansonrMerge branch 'Jalview-BH/JAL-3026' of https://source...
2018-07-05 hansonrJAL-3026 fixes MigLayout, JSON parser
2018-07-05 gmungocJAL-3058 refactored raising JColorChooser for JS compat...
2018-06-28 Jim ProcterJAL-3048 TODOs for refactoring JalviewFileChooser pattern
2018-06-27 hansonrJAL-3032 just the changes pulled already
2018-06-26 Jim ProcterJAL-3035 - jalview-das is no more !
2018-05-14 gmungocJAL-2711 show short file names in search database combo box
2018-04-17 Mungo CarstairsJAL-2937 working Cygwin bash execution of hmmbuild...
2018-04-16 gmungocJAL-2937 use preferences for presets, simplify some...
2018-04-09 Mungo CarstairsJAL-2937 Cygwin path preference, method refactoring
2018-03-20 gmungocMerge branch 'develop' into features/mchmmer
2018-03-13 gmungocJAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
2018-02-20 gmungocMerge branch 'develop' into features/mchmmer
2018-02-19 gmungocJAL-2629 refactoring of Hmmer preferences
2018-01-10 gmungocJAL-1793 update spike branch to latest
2017-11-30 Jim ProcterJAL-2849 JAL-2863 file format preferences TODO

2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-04 Jim ProcterJAL-2527 move default colours for applet / application...
2017-09-01 TZVanaaltenJAL-2629 fix hmmbuild validation failing if no AlignFra...
2017-08-31 kiramtJAL-2527 Updates following code review
2017-08-30 kiramtJAL-2527 Added default setting/resetting and first...
2017-08-29 kiramtJAL-2527 Added overview prefs - don't get picked up...
2017-08-28 kiramtJAL-2527 Started adding overview preferences
2017-08-28 TZVanaaltenJAL-2629 fix HMMER validation fail due to checking...
2017-08-25 TZVanaaltenJAL-2629 add ability to add and select a DB for hmmsearch
2017-08-18 TZVanaaltenMerge branch 'develop' into features/hmmer
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