2022-11-21 |
Jim Procter | Merge commit 'alpha/update_2_12_for_2_11_2_series_merge... |
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2021-11-03 |
Jim Procter | JAL-3915 remove RNAview opts from preferences. Still... |
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2021-10-01 |
Jim Procter | JAL-3616 explicit configure external viewer config |
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2021-09-15 |
Jim Procter | JAL-3741 http to https (and jar to jvp for exampleFile... |
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2021-09-14 |
Ben Soares | JAL-2422 More helpful highlighting/user guidance of... |
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2020-12-14 |
Jim Procter | Merge branch 'Jalview-JS/develop' into merge_js_develop |
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2020-11-13 |
Ben Soares | JAL-3775 Eclipse re-formatting commit |
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2020-11-13 |
Ben Soares | JAL-3633 Apply (proxy) button enabled when needed |
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2020-11-13 |
Ben Soares | JAL-3633 Small changes to allow future fitting with... |
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2020-11-13 |
Ben Soares | JAL-3275 JAL-3633: JAL-3275 Turned Preferences into... |
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2020-11-13 |
Ben Soares | JAL-3633 Set proxy preferences before web calls in... |
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2020-11-13 |
Ben Soares | JAL-3633 Memory only proxy auth password storage. Open... |
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2020-11-12 |
Ben Soares | JAL-3633 Added Proxy Authentication credentials in... |
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2020-11-12 |
Ben Soares | JAL-3633 Remember system set proxy properties. Add... |
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2020-07-09 |
Mateusz Warowny | Merge branch 'feature/JAL-3686_slivka_client_js_update... alpha/merge_212_JalviewJS_2112 |
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2020-06-04 |
gmungoc | JAL-3446 post-merge unit test fixes, formatting |
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2020-06-03 |
BobHanson | JAL-3446 from JAL-3253 ApplicationSingletonProvider... |
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2020-06-02 |
BobHanson | JAL-3446 from JAL-3253 ApplicationSingletonProvider... |
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2020-06-02 |
BobHanson | Preferences/StructureViewer fix |
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2020-06-02 |
BobHanson | JAL-3446 JAL-3253 Preferences |
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2020-06-02 |
BobHanson | JAL-3626 from JAL-3253-applet Jalview.java |
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2020-06-02 |
BobHanson | JAL-3626 from JAL-3253-applet Cache applicationProperti... |
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2020-06-01 |
BobHanson | JAL-3626 from JAL-3253-applet CalculationChooser |
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2020-06-01 |
BobHanson | JAL-3262 from JAL-3253-applet Preferences final static... |
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2020-05-24 |
Jim Procter | JAL-3407 redact Java 8 incompatible '<>' with anonymous... |
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2020-05-19 |
gmungoc | Merge branch 'develop' into feature/JAL-3551Pymol |
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2020-05-18 |
Jim Procter | Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into... |
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2020-05-11 |
gmungoc | JAL-2422 JAL-3551 viewer text/variables generalised... |
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2020-04-23 |
Jim Procter | Merge branch 'develop' into alpha/JAL-3362_Jalview_212_... |
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2020-03-30 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
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2020-03-13 |
gmungoc | JAL-3551 working proof of concept of Jalview driving... |
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2020-03-09 |
gmungoc | Merge branch 'develop' into feature/JAL-2422ChimeraX |
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2020-03-02 |
Jim Procter | JAL-3407 redact Java 8 incompatible '<>' with anonymous... |
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2020-02-19 |
Jim Procter | JAL-3538 anti-aliasing enabled by default |
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2020-02-04 |
MMWarowny | JAL-3515 Build a WSPreferences page for Slivka services. |
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2020-01-31 |
gmungoc | JAL-2422 more responsive Chimera/X path prompts in... |
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2020-01-28 |
gmungoc | JAL-2422 ChimeraX added to Preferences |
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2019-07-16 |
gmungoc | JAL-3210 Merge branch 'develop' into trialMerge |
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2019-06-04 |
Jim Procter | Merge branch 'develop' into developtomchmmer |
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2019-05-27 |
Ben Soares | JAL-3141 Added HashMap types for Java 1.8 compatibility |
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2019-05-24 |
Ben Soares | JAL-3141 Reworked a lot of BackupFiles to allow the... |
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2019-04-03 |
hansonr | replacing @j2sNative with @j2sIgnore where appropriate... |
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2019-03-27 |
hansonr | isJS cleanup |
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2019-03-15 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
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2019-03-15 |
gmungoc | JAL-3203 Overview show hidden default false also in... |
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2019-03-13 |
gmungoc | Merge branch 'develop' into trialMerge |
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2019-01-26 |
hansonr | Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -... |
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2019-01-24 |
Ben Soares | JAL-3141 New layout and wording of Backups Preferences... |
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2019-01-23 |
Ben Soares | JAL-3141 Added Presets options in the Backups Preferenc... |
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2019-01-21 |
hansonr | isAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA... |
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2019-01-20 |
Ben Soares | JAL-3141 Fixed example filenames in Preferences pane... |
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2019-01-20 |
Ben Soares | JAL-3141 Changed suffix position to after the extension... |
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2019-01-08 |
Ben Soares | JAL-3141 Made some suggested changes from code review |
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2018-11-05 |
Ben Soares | JAL-3141 couple of minor fixes for example files being... |
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2018-11-02 |
Ben Soares | JAL-3141 Tests now available and working, bringing... |
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2018-11-01 |
Ben Soares | JAL-3141 Preferences 'Backups' tab now fits. Moved... |
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2018-10-31 |
Ben Soares | JAL-3141 Preferences 'Backups' tab now working. Doesn... |
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2018-08-20 |
gmungoc | JAL-3084 force EPS output to "Text" for JalviewJS |
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2018-08-20 |
gmungoc | JAL-3084 hide startup file, Chimera, HTML/SVG, Web... |
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2018-07-23 |
Jim Procter | Merge branch 'features/mchmmer' into merge/wsinterfaces... |
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2018-07-17 |
gmungoc | JAL-3068 LineartOptions for EPS/HTML/SVG, new preferenc... task/JAL-3068lineartDialog |
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2018-07-10 |
gmungoc | JAL-3048 code reordered for JalviewJS compliance |
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2018-07-05 |
hansonr | Merge branch 'Jalview-BH/JAL-3026' of https://source... |
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2018-07-05 |
hansonr | JAL-3026 fixes MigLayout, JSON parser |
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2018-07-05 |
gmungoc | JAL-3058 refactored raising JColorChooser for JS compat... |
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2018-06-28 |
Jim Procter | JAL-3048 TODOs for refactoring JalviewFileChooser pattern |
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2018-06-27 |
hansonr | JAL-3032 just the changes pulled already |
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2018-06-26 |
Jim Procter | JAL-3035 - jalview-das is no more ! |
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2018-05-14 |
gmungoc | JAL-2711 show short file names in search database combo box |
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2018-04-17 |
Mungo Carstairs | JAL-2937 working Cygwin bash execution of hmmbuild... |
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2018-04-16 |
gmungoc | JAL-2937 use preferences for presets, simplify some... |
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2018-04-09 |
Mungo Carstairs | JAL-2937 Cygwin path preference, method refactoring |
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2018-03-20 |
gmungoc | Merge branch 'develop' into features/mchmmer |
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2018-03-13 |
gmungoc | JAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH) |
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2018-02-20 |
gmungoc | Merge branch 'develop' into features/mchmmer |
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2018-02-19 |
gmungoc | JAL-2629 refactoring of Hmmer preferences |
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2018-01-10 |
gmungoc | JAL-1793 update spike branch to latest |
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2017-11-30 |
Jim Procter | JAL-2849 JAL-2863 file format preferences TODO
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2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
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2017-09-04 |
Jim Procter | JAL-2527 move default colours for applet / application... |
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2017-09-01 |
TZVanaalten | JAL-2629 fix hmmbuild validation failing if no AlignFra... |
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2017-08-31 |
kiramt | JAL-2527 Updates following code review |
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2017-08-30 |
kiramt | JAL-2527 Added default setting/resetting and first... |
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2017-08-29 |
kiramt | JAL-2527 Added overview prefs - don't get picked up... |
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2017-08-28 |
kiramt | JAL-2527 Started adding overview preferences |
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2017-08-28 |
TZVanaalten | JAL-2629 fix HMMER validation fail due to checking... |
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2017-08-25 |
TZVanaalten | JAL-2629 add ability to add and select a DB for hmmsearch |
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2017-08-18 |
TZVanaalten | Merge branch 'develop' into features/hmmer |
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2017-08-16 |
Jim Procter | JAL-2418 source formatting |
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2017-08-16 |
TZVanaalten | JAL-2629 add hmmbuild validation check which also gets... |
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2017-08-15 |
TZVanaalten | JAL-2629 add checks for executing hmmer commands as... |
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2017-08-15 |
tzvanaalten | JAL-2629 fix file loading issues on Mac |
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2017-08-15 |
TZVanaalten | JAL-2629 add HMMER version check |
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2017-08-15 |
TZVanaalten | JAL-2629 the HMMER tab is now disabled when HMMER is... |
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2017-08-14 |
TZVanaalten | JAL-2629 add validation for HMMER path |
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2017-08-13 |
TZVanaalten | JAL-2629 add HMMER tab in preferences menu |
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2017-08-08 |
TZVanaalten | JAL-2629 add ability to select hmmer binaries folder |
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2017-07-25 |
TZVanaalten | JAL-2629 add non-functional HMMER menu |
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2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
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2017-04-27 |
Jim Procter | JAL-1933 desktop preferences for occupancy |
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