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[jalview.git] / src / jalview / gui / Preferences.java

2024-03-15	Mateusz Warowny	JAL-4389 Adjust preferences menu to work with any WSDis...	blob \| commitdiff
2022-12-14	Jim Procter	Merge branch 'develop' into update_212_Dec_merge_with_2...	blob \| commitdiff \| diff to current
2022-12-13	Jim Procter	Merge branch 'alpha/origin_2022_JAL-3066_Jalview_212_sl...	blob \| commitdiff \| diff to current
2022-11-21	Jim Procter	Merge commit 'alpha/update_2_12_for_2_11_2_series_merge...	blob \| commitdiff \| diff to current
2022-03-08	Ben Soares	JAL-3103 Removed code and unused widgets for defaultBrowser	blob \| commitdiff \| diff to current
2022-03-08	Ben Soares	JAL-3103 Remove BrowserLauncher2 and use Desktop.browse...	blob \| commitdiff \| diff to current
2022-03-08	Ben Soares	JAL-3103 Put jalview.jar first in getdown for .properti...	blob \| commitdiff \| diff to current
2022-03-07	Ben Soares	JAL-3103 Switched to (a wrapper around) BrowserLauncher2	blob \| commitdiff \| diff to current
2022-02-11	Jim Procter	JAL-3949 - refactor logging from jalview.bin.Cache...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff \| diff to current
2022-01-27	Jim Procter	Merge branch 'bug/JAL-3633_read_proxy_settings_from_jal...	blob \| commitdiff \| diff to current
2021-11-03	Jim Procter	JAL-3915 remove RNAview opts from preferences. Still...	blob \| commitdiff \| diff to current
2021-10-01	Jim Procter	JAL-3616 explicit configure external viewer config	blob \| commitdiff \| diff to current
2021-09-15	Jim Procter	JAL-3741 http to https (and jar to jvp for exampleFile...	blob \| commitdiff \| diff to current
2021-09-14	Ben Soares	JAL-2422 More helpful highlighting/user guidance of...	blob \| commitdiff \| diff to current
2021-07-22	Jim Procter	JAL-3848 enable slivka services dialog in JalviewJS	blob \| commitdiff \| diff to current
2021-03-19	Ben Soares	JAL-3503 Added a Startup tab in Preferences, with gui...	blob \| commitdiff \| diff to current
2020-12-14	Jim Procter	Merge branch 'Jalview-JS/develop' into merge_js_develop	blob \| commitdiff \| diff to current
2020-11-13	Ben Soares	JAL-3775 Eclipse re-formatting commit	blob \| commitdiff \| diff to current
2020-11-13	Ben Soares	JAL-3633 Apply (proxy) button enabled when needed	blob \| commitdiff \| diff to current
2020-11-13	Ben Soares	JAL-3633 Small changes to allow future fitting with...	blob \| commitdiff \| diff to current
2020-11-13	Ben Soares	JAL-3275 JAL-3633: JAL-3275 Turned Preferences into...	blob \| commitdiff \| diff to current
2020-11-13	Ben Soares	JAL-3633 Set proxy preferences before web calls in...	blob \| commitdiff \| diff to current
2020-11-13	Ben Soares	JAL-3633 Memory only proxy auth password storage. Open...	blob \| commitdiff \| diff to current
2020-11-12	Ben Soares	JAL-3633 Added Proxy Authentication credentials in...	blob \| commitdiff \| diff to current
2020-11-12	Ben Soares	JAL-3633 Remember system set proxy properties. Add...	blob \| commitdiff \| diff to current
2020-09-17	Jim Procter	JAL-3741 http to https (and jar to jvp for exampleFile...	blob \| commitdiff \| diff to current
2020-07-09	Mateusz Warowny	Merge branch 'feature/JAL-3686_slivka_client_js_update... alpha/merge_212_JalviewJS_2112	blob \| commitdiff \| diff to current
2020-06-04	gmungoc	JAL-3446 post-merge unit test fixes, formatting	blob \| commitdiff \| diff to current
2020-06-03	BobHanson	JAL-3446 from JAL-3253 ApplicationSingletonProvider...	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	JAL-3446 from JAL-3253 ApplicationSingletonProvider...	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	Preferences/StructureViewer fix	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	JAL-3446 JAL-3253 Preferences	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	JAL-3626 from JAL-3253-applet Jalview.java	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	JAL-3626 from JAL-3253-applet Cache applicationProperti...	blob \| commitdiff \| diff to current
2020-06-01	BobHanson	JAL-3626 from JAL-3253-applet CalculationChooser	blob \| commitdiff \| diff to current
2020-06-01	BobHanson	JAL-3262 from JAL-3253-applet Preferences final static...	blob \| commitdiff \| diff to current
2020-05-24	Jim Procter	JAL-3407 redact Java 8 incompatible '<>' with anonymous...	blob \| commitdiff \| diff to current
2020-05-19	gmungoc	Merge branch 'develop' into feature/JAL-3551Pymol	blob \| commitdiff \| diff to current
2020-05-18	Jim Procter	Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...	blob \| commitdiff \| diff to current
2020-05-11	gmungoc	JAL-2422 JAL-3551 viewer text/variables generalised...	blob \| commitdiff \| diff to current
2020-04-23	Jim Procter	Merge branch 'develop' into alpha/JAL-3362_Jalview_212_...	blob \| commitdiff \| diff to current
2020-03-30	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2020-03-13	gmungoc	JAL-3551 working proof of concept of Jalview driving...	blob \| commitdiff \| diff to current
2020-03-09	gmungoc	Merge branch 'develop' into feature/JAL-2422ChimeraX	blob \| commitdiff \| diff to current
2020-03-02	Jim Procter	JAL-3407 redact Java 8 incompatible '<>' with anonymous...	blob \| commitdiff \| diff to current
2020-02-19	Jim Procter	JAL-3538 anti-aliasing enabled by default	blob \| commitdiff \| diff to current
2020-02-04	MMWarowny	JAL-3515 Build a WSPreferences page for Slivka services.	blob \| commitdiff \| diff to current
2020-01-31	gmungoc	JAL-2422 more responsive Chimera/X path prompts in...	blob \| commitdiff \| diff to current
2020-01-28	gmungoc	JAL-2422 ChimeraX added to Preferences	blob \| commitdiff \| diff to current
2019-07-16	gmungoc	JAL-3210 Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-06-04	Jim Procter	Merge branch 'develop' into developtomchmmer	blob \| commitdiff \| diff to current
2019-05-27	Ben Soares	JAL-3141 Added HashMap types for Java 1.8 compatibility	blob \| commitdiff \| diff to current
2019-05-24	Ben Soares	JAL-3141 Reworked a lot of BackupFiles to allow the...	blob \| commitdiff \| diff to current
2019-04-03	hansonr	replacing @j2sNative with @j2sIgnore where appropriate...	blob \| commitdiff \| diff to current
2019-03-27	hansonr	isJS cleanup	blob \| commitdiff \| diff to current
2019-03-15	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2019-03-15	gmungoc	JAL-3203 Overview show hidden default false also in...	blob \| commitdiff \| diff to current
2019-03-13	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-01-26	hansonr	Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...	blob \| commitdiff \| diff to current
2019-01-24	Ben Soares	JAL-3141 New layout and wording of Backups Preferences...	blob \| commitdiff \| diff to current
2019-01-23	Ben Soares	JAL-3141 Added Presets options in the Backups Preferenc...	blob \| commitdiff \| diff to current
2019-01-21	hansonr	isAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...	blob \| commitdiff \| diff to current
2019-01-20	Ben Soares	JAL-3141 Fixed example filenames in Preferences pane...	blob \| commitdiff \| diff to current
2019-01-20	Ben Soares	JAL-3141 Changed suffix position to after the extension...	blob \| commitdiff \| diff to current
2019-01-08	Ben Soares	JAL-3141 Made some suggested changes from code review	blob \| commitdiff \| diff to current
2018-11-05	Ben Soares	JAL-3141 couple of minor fixes for example files being...	blob \| commitdiff \| diff to current
2018-11-02	Ben Soares	JAL-3141 Tests now available and working, bringing...	blob \| commitdiff \| diff to current
2018-11-01	Ben Soares	JAL-3141 Preferences 'Backups' tab now fits. Moved...	blob \| commitdiff \| diff to current
2018-10-31	Ben Soares	JAL-3141 Preferences 'Backups' tab now working. Doesn...	blob \| commitdiff \| diff to current
2018-08-20	gmungoc	JAL-3084 force EPS output to "Text" for JalviewJS	blob \| commitdiff \| diff to current
2018-08-20	gmungoc	JAL-3084 hide startup file, Chimera, HTML/SVG, Web...	blob \| commitdiff \| diff to current
2018-07-23	Jim Procter	Merge branch 'features/mchmmer' into merge/wsinterfaces...	blob \| commitdiff \| diff to current
2018-07-17	gmungoc	JAL-3068 LineartOptions for EPS/HTML/SVG, new preferenc... task/JAL-3068lineartDialog	blob \| commitdiff \| diff to current
2018-07-10	gmungoc	JAL-3048 code reordered for JalviewJS compliance	blob \| commitdiff \| diff to current
2018-07-05	hansonr	Merge branch 'Jalview-BH/JAL-3026' of https://source...	blob \| commitdiff \| diff to current
2018-07-05	hansonr	JAL-3026 fixes MigLayout, JSON parser	blob \| commitdiff \| diff to current
2018-07-05	gmungoc	JAL-3058 refactored raising JColorChooser for JS compat...	blob \| commitdiff \| diff to current
2018-06-28	Jim Procter	JAL-3048 TODOs for refactoring JalviewFileChooser pattern	blob \| commitdiff \| diff to current
2018-06-27	hansonr	JAL-3032 just the changes pulled already	blob \| commitdiff \| diff to current
2018-06-26	Jim Procter	JAL-3035 - jalview-das is no more !	blob \| commitdiff \| diff to current
2018-05-14	gmungoc	JAL-2711 show short file names in search database combo box	blob \| commitdiff \| diff to current
2018-04-17	Mungo Carstairs	JAL-2937 working Cygwin bash execution of hmmbuild...	blob \| commitdiff \| diff to current
2018-04-16	gmungoc	JAL-2937 use preferences for presets, simplify some...	blob \| commitdiff \| diff to current
2018-04-09	Mungo Carstairs	JAL-2937 Cygwin path preference, method refactoring	blob \| commitdiff \| diff to current
2018-03-20	gmungoc	Merge branch 'develop' into features/mchmmer	blob \| commitdiff \| diff to current
2018-03-13	gmungoc	JAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)	blob \| commitdiff \| diff to current
2018-02-20	gmungoc	Merge branch 'develop' into features/mchmmer	blob \| commitdiff \| diff to current
2018-02-19	gmungoc	JAL-2629 refactoring of Hmmer preferences	blob \| commitdiff \| diff to current
2018-01-10	gmungoc	JAL-1793 update spike branch to latest	blob \| commitdiff \| diff to current
2017-11-30	Jim Procter	JAL-2849 JAL-2863 file format preferences TODO	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-09-04	Jim Procter	JAL-2527 move default colours for applet / application...	blob \| commitdiff \| diff to current
2017-09-01	TZVanaalten	JAL-2629 fix hmmbuild validation failing if no AlignFra...	blob \| commitdiff \| diff to current
2017-08-31	kiramt	JAL-2527 Updates following code review	blob \| commitdiff \| diff to current
2017-08-30	kiramt	JAL-2527 Added default setting/resetting and first...	blob \| commitdiff \| diff to current
2017-08-29	kiramt	JAL-2527 Added overview prefs - don't get picked up...	blob \| commitdiff \| diff to current
2017-08-28	kiramt	JAL-2527 Started adding overview preferences	blob \| commitdiff \| diff to current
2017-08-28	TZVanaalten	JAL-2629 fix HMMER validation fail due to checking...	blob \| commitdiff \| diff to current
2017-08-25	TZVanaalten	JAL-2629 add ability to add and select a DB for hmmsearch	blob \| commitdiff \| diff to current
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