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JAL-1013 - toy menu to switch between nucleotide and blosum 62 modes of calculation...
[jalview.git]
/
src
/
jalview
/
gui
/
2011-12-13
jprocter
JAL-1013 - toy menu to switch between nucleotide and...
tree
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commitdiff
2011-12-08
jprocter
(JAL-1013) specify sequence type to ensure PCA calculat...
tree
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commitdiff
2011-11-21
jprocter
(JAL-368) ensure window never gets a negative Y coordin...
tree
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commitdiff
2011-11-20
jprocter
(JAL-1004) add mouse listener to internal panel
tree
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commitdiff
2011-11-09
jprocter
(JAL-986) rendering to imageMap counts as rendering...
tree
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commitdiff
2011-11-09
jprocter
(JAL-985,JAL-986) documentation and tooltips
tree
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commitdiff
2011-11-09
jprocter
(JAL-985,JAL-986) allow different ID margin calculation...
tree
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commitdiff
2011-11-09
jprocter
(JAL-985,JAL-986) preference widgets for settings
tree
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commitdiff
2011-11-04
jprocter
(JAL-980) update binding for refactored Jmol constants...
tree
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commitdiff
2011-09-27
jprocter
same overzeaolous logic (JAL-915)
tree
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
tree
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commitdiff
2011-09-26
jprocter
tweaked dialog layout. should consider refactoring
tree
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commitdiff
2011-09-26
jprocter
make news window a modal dialog on the jalview desktop...
tree
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commitdiff
2011-09-26
jprocter
avoid deprecation and ensure dialog close event is...
tree
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commitdiff
2011-09-25
jprocter
organise imports
tree
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commitdiff
2011-09-25
jprocter
more focus fixing (JAL-943)
tree
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commitdiff
2011-09-25
jprocter
fix logic to ensure first check for news is correct...
tree
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commitdiff
2011-09-23
jprocter
try even harder to get focus - for benefit of windows...
tree
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commitdiff
2011-09-23
jprocter
ensure blog window gets put to front after dialogs...
tree
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commitdiff
2011-09-22
jprocter
refactor and remove excess imports (JAL-943)
tree
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commitdiff
2011-09-22
jprocter
jalview rss reader based on jswingreader (JAL-943)
tree
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commitdiff
2011-09-16
jprocter
JAL-747 - made warning message friendlier and more...
tree
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commitdiff
2011-09-16
jprocter
JAL-574 added option to enable/disable 'follow selectio...
tree
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commitdiff
2011-09-16
jprocter
JAL-940 - removed legacy service options from preferenc...
tree
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commitdiff
2011-09-16
jprocter
JAL-468 JAL-936 sort alignment by tree and autosort...
tree
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commitdiff
2011-09-15
jprocter
JAL-860 fixed grammar for one structure vs many structu...
tree
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commitdiff
2011-09-15
jprocter
JAL-854 tweaked menu layout so services appear before...
tree
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commitdiff
2011-09-14
jprocter
JAL-934 - refactor to use label font functions
tree
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commitdiff
2011-09-14
jprocter
JAL-934 - refactor to use label font functions
tree
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commitdiff
2011-09-14
jprocter
JAL-934 - standard label font functions
tree
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commitdiff
2011-09-14
jprocter
patch for NPE (not clear if NPE is evidence of deeper...
tree
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commitdiff
2011-09-14
jprocter
JAL-766 JAL-733 - new alignment->jmol associations...
tree
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commitdiff
2011-09-14
jprocter
JAL-766 JAL-733 - new alignment->jmol associations...
tree
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commitdiff
2011-09-14
jprocter
JAL-766 JAL-733 - new alignment->jmol associations...
tree
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commitdiff
2011-08-30
jprocter
JAL-915 - ensured that exceptions are not raised in...
tree
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commitdiff
2011-08-30
jprocter
JAL-715 rsbs service editing
tree
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commitdiff
2011-08-30
jprocter
JAL-715 JalviewDialog for RSBS service editing pane
tree
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commitdiff
2011-08-29
jprocter
JAL-919, JAL-715 - prototype service editing dialog...
tree
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commitdiff
2011-08-29
jprocter
JAL-633, JAL-591 - refactored ArgumentI.getValue from...
tree
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commitdiff
2011-08-29
jprocter
refactored popup dialog boilerplate code to own class
tree
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commitdiff
2011-08-25
jprocter
constructor only needs GUI container interface
tree
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commitdiff
2011-08-25
jprocter
JAL-591 - refactored web service parameter dialog to...
tree
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commitdiff
2011-08-25
jprocter
debug dialog
tree
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commitdiff
2011-08-24
jprocter
JAL-715 dialog for interactively editing a new or exist...
tree
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commitdiff
2011-08-24
jprocter
refactor labelled button creator to JvSwingUtils
tree
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commitdiff
2011-08-18
jprocter
remove debug message
tree
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commitdiff
2011-08-18
jprocter
fix for JAL-701 - ensure '<' appears in tooltip in...
tree
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commitdiff
2011-08-18
jprocter
minor efficiency refactor
tree
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commitdiff
2011-08-17
jprocter
JAL-853 use service action attribute to index services...
tree
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commitdiff
2011-08-17
jprocter
remove any trailing '/' from the URL before validation...
tree
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commitdiff
2011-08-17
jprocter
avoid NPE race condition when several threads waiting...
tree
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commitdiff
2011-08-17
jprocter
fix for JAL-888
tree
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commitdiff
2011-08-17
jprocter
fix for JAL-888
tree
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commitdiff
2011-08-17
jprocter
JAL-867 - rejigged layout to a single splitpane wide...
tree
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commitdiff
2011-08-15
jprocter
JAL-747 - warning dialog if Jalview can't resolve filen...
tree
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commitdiff
2011-08-05
jprocter
allow several progress bars on the desktop window ...
tree
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commitdiff
2011-07-28
jprocter
refer to local default setting for proxy when connecting to
tree
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commitdiff
2011-07-25
jprocter
use proper encoding for storing colour as user preferen...
tree
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commitdiff
2011-07-22
jprocter
todo for JAL-860 - associate multiple sequences with...
tree
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commitdiff
2011-07-22
jprocter
ensure propagation of colour change on annotation updat...
tree
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commitdiff
2011-07-22
jprocter
fix NPE when annotation colourgradient is applied
tree
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commitdiff
2011-07-22
jprocter
code style
tree
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commitdiff
2011-07-22
jprocter
default parameter for colours in annotation shading...
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commitdiff
2011-07-21
jprocter
retrieve all sequences matching a particular name ...
tree
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commitdiff
2011-07-10
jprocter
progress when saving state (JAL-870) and hack to trap...
tree
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commitdiff
2011-07-09
jprocter
documentation for menu item JAL-860
tree
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commitdiff
2011-07-09
jprocter
menu item and constructor to open a bunch of structures...
tree
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commitdiff
2011-07-09
jprocter
refactored from PopupMenu (for JAL-860)
tree
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commitdiff
2011-07-09
jprocter
JAL-868 todo
tree
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commitdiff
2011-07-08
jprocter
open each query result from an alignment datasource...
tree
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commitdiff
2011-07-07
jprocter
comment re JAL-153
tree
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commitdiff
2011-07-05
jprocter
Revert "partial patch for JAL-411 - text rendered above...
tree
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commitdiff
2011-07-05
jprocter
partial patch for JAL-411 - text rendered above features
tree
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commitdiff
2011-07-04
jprocter
jmb isn't created yet, so use another SSM provider
tree
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commitdiff
2011-06-23
jprocter
jmb isn't created yet, so use another SSM provider
tree
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commitdiff
2011-05-17
jprocter
refactor to allow distinct StructureSelectionManager...
tree
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commitdiff
2011-05-05
jprocter
ensure feature renderer settings come from the given...
tree
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commitdiff
2011-04-25
jprocter
JAL-824 - additional methods to allow jmol colouring...
tree
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commitdiff
2011-04-25
jprocter
JAL-824 - patch to schema to allow jmol colouring state...
tree
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commitdiff
2011-04-25
jprocter
toggle of inclusion/exclusion of views for colouring...
tree
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commitdiff
2011-04-22
jprocter
formatting
tree
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commitdiff
2011-04-22
jprocter
removed useless flag (was always null for button press...
tree
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commitdiff
2011-04-22
jprocter
JAL-823 and JAL-824 - seqColour no longer the default...
tree
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commitdiff
2011-04-22
jprocter
comments re JAL-823 legacy issue
tree
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commitdiff
2011-04-22
jprocter
clarify tooltip
tree
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commitdiff
2011-04-21
jprocter
JAL-641 patch
tree
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commitdiff
2011-04-21
jprocter
patch for JAL-733
tree
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commitdiff
2011-04-21
jprocter
patch for JAL-820 and JAL-821
tree
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commitdiff
2011-04-21
jprocter
separated alignment annotation height calculation from...
tree
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commitdiff
2011-04-21
jprocter
save and recover graph height, visibility and row posit...
tree
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commitdiff
2011-04-19
jprocter
avoid race condition when featureRenderer for structure...
tree
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commitdiff
2011-04-08
jprocter
todo
tree
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commitdiff
2011-02-28
jprocter
excess imports
tree
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commitdiff
2011-02-25
jprocter
first approximation for JAL-782 - hint that opaque...
tree
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commitdiff
2011-02-18
jprocter
JAL-777/JAL-641 debugging
tree
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commitdiff
2011-02-18
jprocter
new alignmentPanel api + JAL-777/JAL-641 debugging
tree
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commitdiff
2011-02-18
jprocter
JAL-574
tree
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commitdiff
2011-02-18
jprocter
convenience method to discover all Jmols
tree
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commitdiff
2011-02-18
jprocter
JAL-779 and some redraw refinements
tree
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commitdiff
2011-02-18
jprocter
JAl-574
tree
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commitdiff
next