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JAL-1996 added link for viewing example source codes, changed release history outline...
[jalview.git]
/
src
/
jalview
/
gui
/
2016-06-21
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
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commitdiff
2016-06-21
gmungoc
JAL-2074 suppress prompt to save closed Groovy script...
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-1956_featureStyles' into...
tree
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commitdiff
2016-06-21
gmungoc
JAL-2074 reuse Groovy window when reopening; rebind...
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1369 mark reference sequence & view state and resto...
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1369 project XML efficiency TODO
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1369 dead code TODO?
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1369 ensure *real* alignment’s metadata written...
tree
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commitdiff
2016-06-20
Jim Procter
JAL-1551 tidy
tree
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commitdiff
2016-06-20
Jim Procter
JAL-2065 don’t pass stale group reference
tree
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commitdiff
2016-06-20
Jim Procter
JAL-2068 avoid ArrayIndexOutOfBounds when consensus...
tree
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commitdiff
2016-06-20
Jim Procter
JAL-2065 check position lies within group before gettin...
tree
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commitdiff
2016-06-20
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-06-20
tcofoegbu
JAL-1823 Deleted two obsolete methods in PopupMenu...
tree
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commitdiff
2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-1812_JAL-2083_...
features/JAL-1812_JAL-2083_groovyBinding
tree
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commitdiff
2016-06-16
gmungoc
JAL-1993 close sequence fetcher when opening database...
tree
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commitdiff
2016-06-16
gmungoc
JAL-1993 hide sequence fetcher dialogue until database...
tree
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commitdiff
2016-06-15
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-06-15
tcofoegbu
JAL-2002 disabled 'Best Uniport Coverage' filter. JAL...
tree
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commitdiff
2016-06-15
gmungoc
JAL-2025 unit tests added
tree
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commitdiff
2016-06-14
tcofoegbu
JAL-2047 resolved structure chooser's displayed column...
tree
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commitdiff
2016-06-08
tcofoegbu
JAL-1479 JAL- Fix to eradicate duplicate mapping output...
tree
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commitdiff
2016-06-06
tcofoegbu
JAL-1919, JAL-1960 fix to disable refetching dbrefs...
tree
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commitdiff
2016-06-06
tcofoegbu
JAL-1944 bugfix for wrong alignment numbering when...
tree
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commitdiff
2016-06-02
gmungoc
JAL-1424 corrected typos in message text keys
tree
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commitdiff
2016-06-01
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-06-01
tcofoegbu
JAL-1944 updated bugfix implementation
tree
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commitdiff
2016-06-01
gmungoc
JAL-1424 utility to check resource bundle labels used...
tree
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commitdiff
2016-05-31
tcofoegbu
merge
tree
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commitdiff
2016-05-31
tcofoegbu
JAL-1944 fix for visible seqs sometimes been replaced...
tree
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commitdiff
2016-05-31
gmungoc
JAL-2023 adjustments to mappings added for split frame...
tree
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commitdiff
2016-05-31
Jim Procter
Merge branch 'jims/291patches' into develop
tree
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commitdiff
2016-05-31
gmungoc
JAL-1011 JAL-1989 don't mirror column-only selections...
tree
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commitdiff
2016-05-30
Jim Procter
JAL-553 JAL-1557 always send selections after triggerin...
tree
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commitdiff
2016-05-30
Jim Procter
JAL-1557 allow group associated rows to be used to...
tree
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commitdiff
2016-05-30
Jim Procter
JAL-2077 fix: convenience method and checks for CMD...
tree
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commitdiff
2016-05-30
Jim Procter
JAL-1552 fix JAL-2122 resolve File->string before addin...
tree
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commitdiff
2016-05-27
gmungoc
JAL-1989 tightened up use of flag for 'column selection...
tree
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commitdiff
2016-05-27
gmungoc
JAL-1911 use existing object when setting 'Prompt each...
tree
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commitdiff
2016-05-27
tcofoegbu
merge
tree
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commitdiff
2016-05-27
tcofoegbu
JAL-1823 improvement to all chain code specification...
tree
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commitdiff
2016-05-27
tcofoegbu
JAL-1911 further improvement to bugfix - do not save...
tree
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commitdiff
2016-05-27
gmungoc
JAL-1942 small tidy (formatting, explict imports, typed...
tree
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commitdiff
2016-05-26
tcofoegbu
JAL-1911 improvement to bugfix - do not save i18n text...
tree
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commitdiff
2016-05-26
gmungoc
JAL-391 add reverse / complement to command history...
tree
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commitdiff
2016-05-26
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
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commitdiff
2016-05-26
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2016-05-26
Jim Procter
JAL-1552 refactor shared dataflavor hander
tree
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commitdiff
2016-05-26
gmungoc
JAL-1993 open sequence fetcher tree on 'fetch sequences'
tree
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commitdiff
2016-05-26
Jim Procter
JAL-1552 extra debug logging for dataflavor if drop...
tree
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commitdiff
2016-05-26
tcofoegbu
merge
tree
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commitdiff
2016-05-26
tcofoegbu
JAL-1911 bugfix - do not save i18n text in preference...
tree
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commitdiff
2016-05-25
Jim Procter
JAL-1522 patch - try to pick best text dataflavor
tree
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commitdiff
2016-05-13
gmungoc
JAL-2105 capture Ensembl data version, check REST versi...
tree
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commitdiff
2016-05-10
gmungoc
Merge branch 'develop' into features/JAL-1956_featureStyles
tree
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commitdiff
2016-05-09
gmungoc
JAL-2018 export graduated feature colours correctly
tree
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commitdiff
2016-05-06
Jim Procter
JAL-192 JAL-2099 unused variables
tree
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commitdiff
2016-05-06
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2016-05-06
Jim Procter
JAL-192 JAL-2099 reuse refactored scale code for wrappe...
tree
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commitdiff
2016-05-06
Jim Procter
JAL-192 JAL-2099 factored out calculation from renderin...
tree
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commitdiff
2016-05-06
Jim Procter
JAL-192 JAL-2099 factored out calculation from renderin...
tree
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commitdiff
2016-05-06
Jim Procter
JAL-192 JAL-2099 factored out calculation from renderin...
tree
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commitdiff
2016-05-06
Jim Procter
JAL-2100 centre triangles on hidden column vertical...
tree
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commitdiff
2016-05-06
Jim Procter
JAL-2100 optimisation
tree
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commitdiff
2016-05-06
Jim Procter
JAL-2100 triangles shown below in jvdesktop unwrapped...
tree
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commitdiff
2016-05-06
Jim Procter
JAL-192 patch off-by-one for pathological gap case
tree
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commitdiff
2016-05-05
Jim Procter
JAL-192 patch for off-by one and pathological case...
tree
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commitdiff
2016-05-04
gmungoc
JAL-2092 hide columns with/without feature
tree
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commitdiff
2016-05-03
gmungoc
JAL-2050 hide introns also when fetching Ensembl xrefs...
tree
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commitdiff
2016-05-02
gmungoc
JAL-1812 bind Groovy to Jalview rather than Desktop...
tree
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commitdiff
2016-04-29
tcofoegbu
merge
tree
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commitdiff
2016-04-29
gmungoc
JAL-2051 better checking of retrieved / duplicated...
tree
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commitdiff
2016-04-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-04-29
Jim Procter
JAL-192 need visible and actual sequence limits for...
tree
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commitdiff
2016-04-29
Jim Procter
JAL-192 fix bounds when no hidden regions, and when...
tree
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commitdiff
2016-04-29
Jim Procter
JAL-192 scale origin relative to start of reference...
tree
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commitdiff
2016-04-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-04-28
gmungoc
JAL-2083 removed use of reflection for Groovy
tree
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commitdiff
2016-04-27
Jim Procter
JAL-192 fix off-by-one for alignment ruler with no...
tree
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commitdiff
2016-04-27
Jim Procter
JAL-192 show reference sequence position and residue...
tree
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commitdiff
2016-04-27
Jim Procter
JAL-1366 JAL-2086 reinstate bolding of reference sequence
tree
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commitdiff
2016-04-27
tcofoegbu
re-enabled new uniprot sequence fetcher on spike branch
tree
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commitdiff
2016-04-26
tcofoegbu
merge
tree
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commitdiff
2016-04-26
tcofoegbu
JAL-1563 reverted to old uniprot fetcher to enable...
tree
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commitdiff
2016-04-26
Jim Procter
JAL-2077 reinstate JAL-1554 fix for left-then-right...
tree
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commitdiff
2016-04-26
Jim Procter
JAL-2077 reinstate annotation label popup by handling...
tree
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commitdiff
2016-04-26
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-04-25
tcofoegbu
develop merge
tree
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commitdiff
2016-04-25
gmungoc
JAL-1812 JAL-2068 only allow one Groovy console open...
tree
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commitdiff
2016-04-24
Jim Procter
JAL-1551 JAL-2077 formatting
tree
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commitdiff
2016-04-24
Jim Procter
JAL-2077 - reinstate popups on osx
tree
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commitdiff
2016-04-24
Jim Procter
JAL-2075 make GroovyConsole a singleton so tests requir...
tree
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commitdiff
2016-04-22
tcofoegbu
JAL-2071 further refactoring, optimisation, and house...
tree
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commitdiff
2016-04-22
gmungoc
JAL-1812 JAL-2068 add Run Groovy Script to AlignFrame...
tree
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commitdiff
2016-04-20
Jim Procter
fix for JAL-2072
tree
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commitdiff
2016-04-19
tcofoegbu
JAL-2071 architectural improvement for Plugable Free...
tree
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commitdiff
2016-04-14
gmungoc
JAL-1421 typed map / lists, explicit imports, method...
tree
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commitdiff
2016-04-14
gmungoc
JAL-1421 type parameter added to some collections
tree
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commitdiff
2016-04-12
gmungoc
JAL-2050 only hide introns if exons are present! Remove...
tree
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commitdiff
2016-04-11
gmungoc
JAL-2051 fetch Ensembl Gene accessions one at a time
tree
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commitdiff
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