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Make sure annots are alignment width
[jalview.git]
/
src
/
jalview
/
gui
/
2007-05-01
amwaterhouse
Multiple views/hidden region/undo out of index bug
tree
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commitdiff
2007-05-01
amwaterhouse
Can specify PDB chain to map sequence to - only used...
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commitdiff
2007-05-01
jprocter
sort-by-score works of sequence-annotation, not alignme...
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commitdiff
2007-05-01
amwaterhouse
Save seqset properties
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commitdiff
2007-04-30
jprocter
fixed deadlock
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commitdiff
2007-04-30
jprocter
rebuild sort by scores menu when new annotation is...
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commitdiff
2007-04-27
amwaterhouse
remove excessive painting
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commitdiff
2007-04-27
amwaterhouse
Check pdbid size >0
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commitdiff
2007-04-27
amwaterhouse
Move repaint in thread
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commitdiff
2007-04-27
amwaterhouse
Put alignmentProperties in scrollpane
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commitdiff
2007-04-27
amwaterhouse
Check feature group is visible for mouse over features
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commitdiff
2007-04-27
amwaterhouse
remove System.out
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commitdiff
2007-04-27
jprocter
newlines in alignment properties converted to <br>
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commitdiff
2007-04-27
amwaterhouse
hide the initial window after selection made
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commitdiff
2007-04-27
amwaterhouse
Annotation gradient will use direct colours if no graph...
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commitdiff
2007-04-27
amwaterhouse
hide annotation colouring options
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commitdiff
2007-04-27
amwaterhouse
Dont colour labels
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commitdiff
2007-04-26
jprocter
added/tested sort by scores menu and added basic extrac...
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commitdiff
2007-04-26
jprocter
use hasScore method to test presence of score in annota...
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commitdiff
2007-04-26
amwaterhouse
check for null ss character
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commitdiff
2007-04-26
amwaterhouse
Edit seqs
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commitdiff
2007-04-26
jprocter
groovy support without compile-time dependency.
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commitdiff
2007-04-25
jprocter
getContentPane().add alignmentProperties popup.
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commitdiff
2007-04-25
amwaterhouse
Show scores
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commitdiff
2007-04-25
amwaterhouse
Export annotations with properties
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commitdiff
2007-04-25
amwaterhouse
View Properties
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commitdiff
2007-04-25
jprocter
AlignmentAnnotation: added annotation score attribute...
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commitdiff
2007-04-23
jprocter
functions that operate on references to sequences in...
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commitdiff
2007-04-23
jprocter
distinct methods for getting references to selected...
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commitdiff
2007-04-23
amwaterhouse
Dbref fetcher takes sequences, not alignment
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commitdiff
2007-04-23
amwaterhouse
Test out new arrangement
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commitdiff
2007-04-23
amwaterhouse
Get colour from structure added
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commitdiff
2007-04-23
amwaterhouse
check dispalyChar is not null
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commitdiff
2007-04-20
jprocter
global dbref fetch option in web services menu.
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commitdiff
2007-04-19
jprocter
fixed column selection cut/paste and self paste.
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commitdiff
2007-04-19
amwaterhouse
Only setDropTarget if Desktop is not null
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commitdiff
2007-04-18
amwaterhouse
hastext = false
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commitdiff
2007-04-18
amwaterhouse
featureGroups not null
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commitdiff
2007-04-18
amwaterhouse
Quality does not have text
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commitdiff
2007-04-18
amwaterhouse
Alignment of labels and text
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commitdiff
2007-04-18
amwaterhouse
checks for scrollbar height
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commitdiff
2007-04-18
amwaterhouse
Disable memory checker for now
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commitdiff
2007-04-17
jprocter
paste adds or creates full copies of objects in clipboa...
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commitdiff
2007-04-17
jprocter
pdb files are global to all alignments with new mapping...
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commitdiff
2007-04-16
amwaterhouse
drawSequence must be synchronized
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commitdiff
2007-04-16
amwaterhouse
Too many calls to paintAlignment
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commitdiff
2007-04-13
amwaterhouse
FeatureRenderer takes alignmentPanel
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commitdiff
2007-04-12
amwaterhouse
Number pad keys can be used in cursor mode
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commitdiff
2007-04-11
jprocter
fixed for display of 'null' group features
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commitdiff
2007-04-11
amwaterhouse
Can add features with no group
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commitdiff
2007-04-11
amwaterhouse
Adjustment for hidden columns
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commitdiff
2007-04-11
amwaterhouse
Use same mouse events as scalePanel
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commitdiff
2007-04-05
amwaterhouse
Paste menu item dispalyed on right click. Memory settin...
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commitdiff
2007-04-04
amwaterhouse
newFEatures flag for seq type
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commitdiff
2007-04-04
amwaterhouse
Use newFeatures flag
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commitdiff
2007-04-04
amwaterhouse
combobox for overlapping features
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commitdiff
2007-04-04
amwaterhouse
paintALignment
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commitdiff
2007-04-04
amwaterhouse
Throw exception if pdb result size is zero
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commitdiff
2007-04-02
jprocter
doco change.
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commitdiff
2007-04-02
jprocter
update settings for new groups (always displayed) and...
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commitdiff
2007-04-02
jprocter
bugfix + create/amend whilst feature panel open (still...
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commitdiff
2007-04-02
jprocter
typo fix.
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commitdiff
2007-04-02
amwaterhouse
Allow for scroll bar height
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commitdiff
2007-04-02
jprocter
feature group state and type order preference storage...
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commitdiff
2007-04-02
jprocter
featuresAdded call for transferred PDB features
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commitdiff
2007-04-02
jprocter
featuresAdded() method, state change support between...
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commitdiff
2007-04-02
amwaterhouse
New seq feature name not added here
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commitdiff
2007-04-02
amwaterhouse
getAllFeaturesAtRes replace by findFeaturesAtRes
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commitdiff
2007-04-02
amwaterhouse
destroy destroyed
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commitdiff
2007-04-02
amwaterhouse
destroy destroyed
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commitdiff
2007-04-02
amwaterhouse
Chain might be null
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commitdiff
2007-04-02
amwaterhouse
Destroy Alignment when closing frame
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commitdiff
2007-04-02
amwaterhouse
Must allow for scrollbar height
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commitdiff
2007-03-27
amwaterhouse
Pick atom highlighted
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commitdiff
2007-03-26
amwaterhouse
Add seq mapping for multiple seq 2 pdbs
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commitdiff
2007-03-26
jprocter
PDB residue numberings transfered and alignment view...
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commitdiff
2007-03-23
jprocter
reenable canceldas after a cancel and subsequence fetch
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commitdiff
2007-03-23
jprocter
lastSeq==null to force refresh of sequencefeature array...
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commitdiff
2007-03-23
amwaterhouse
run and halt buttons must have listeners added
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commitdiff
2007-03-23
amwaterhouse
loadingFromArchive flag added
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commitdiff
2007-03-23
amwaterhouse
run halt hidden, help moved to menu item for stupid...
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commitdiff
2007-03-22
amwaterhouse
Now a JPanel, plus some modifications
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commitdiff
2007-03-22
amwaterhouse
Check exploded pos is not the same as current frame
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commitdiff
2007-03-22
amwaterhouse
Set gatherViewsHere false when making a new tab
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commitdiff
2007-03-22
amwaterhouse
Saves structures
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commitdiff
2007-03-22
amwaterhouse
Jalview colours added to Jmol
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commitdiff
2007-03-19
jprocter
translate aligned cDNA to aligned peptide
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commitdiff
2007-03-19
jprocter
retrieve and parse EMBL records to view exons.
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commitdiff
2007-03-19
jprocter
convenience method to get visible selected region.
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commitdiff
2007-03-19
jprocter
null exception when annotation created with no description.
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commitdiff
2007-02-27
amwaterhouse
Use paintAlignment
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commitdiff
2007-02-27
amwaterhouse
jmol added
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commitdiff
2007-02-12
amwaterhouse
Reload jar files
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commitdiff
2007-02-12
amwaterhouse
Hashtable for previously loaded pdb files
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commitdiff
2007-02-09
jprocter
added 'show overview' preference.
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commitdiff
2007-02-08
jprocter
fix on newquestionaire notification bug (again)
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commitdiff
2007-02-07
amwaterhouse
Formatting
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commitdiff
2007-02-07
amwaterhouse
Extend annotation if too short
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commitdiff
2007-02-07
amwaterhouse
reload, just close this frame and open a new one
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commitdiff
2007-02-06
jprocter
more bugfixes.
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commitdiff
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