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Merge branch 'develop' into features/JAL-3010ontologyFeatureSettings
[jalview.git]
/
src
/
jalview
/
gui
/
2018-11-05
Ben Soares
JAL-3141 couple of minor fixes for example files being...
tree
|
commitdiff
2018-11-02
Ben Soares
JAL-3141 Tests now available and working, bringing...
tree
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commitdiff
2018-11-01
Ben Soares
JAL-3141 Preferences 'Backups' tab now fits. Moved...
tree
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commitdiff
2018-10-31
Ben Soares
JAL-3141 Preferences 'Backups' tab now working. Doesn...
tree
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commitdiff
2018-10-25
Ben Soares
JAL-3141 Ostensibly all backups working for alignment...
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 reinstate ability to set sequence ID colour...
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 use AlignViewportI.addGroup to create & propag...
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 use AlignViewportI.addGroup() to add group...
tree
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commitdiff
2018-10-16
Jim Procter
viewport flag to indicate when structure view needs...
tree
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commitdiff
2018-10-09
Jim Procter
JAL-3127 TODO - resolve reference to Viewport for group...
tree
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commitdiff
2018-10-09
Jim Procter
JAL-3127 pass reference to AlignViewportI when creating...
tree
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commitdiff
2018-10-08
gmungoc
JAL-1244 comments, javadoc, method signature tweaks
feature/JAL-1244stretchStatusMsg
tree
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commitdiff
2018-10-08
gmungoc
JAL-1244 editSequence extract method refactoring
tree
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commitdiff
2018-10-05
gmungoc
JAL-1244 improved status message for insert/delete gap
tree
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commitdiff
2018-10-04
gmungoc
JAL-3132 status message for sequence and/or graph group...
tree
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commitdiff
2018-10-04
gmungoc
JAL-1244 no status message (yet) for locked edit of...
tree
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commitdiff
2018-10-04
gmungoc
JAL-1244 status message for insert/delete gaps on singl...
tree
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commitdiff
2018-10-04
gmungoc
JAL-1244 status message while dragging a stretch group
tree
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commitdiff
2018-10-04
gmungoc
JAL-3132 set status message when over sequence id or...
tree
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commitdiff
2018-10-04
gmungoc
JAL-3093 unit tests, no mouse action over left/right...
tree
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commitdiff
2018-10-03
gmungoc
JAL-3093 tweaks to code and test for 3px gap above...
tree
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commitdiff
2018-10-02
gmungoc
JAL-3093 unit tests for SeqPanel.findMousePosition
tree
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commitdiff
2018-10-02
gmungoc
JAL-3093 limited Consensus popup menu when in wrapped...
tree
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commitdiff
2018-10-02
gmungoc
JAL-3093 added MousePos.isOverAnnotation() for extra...
tree
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commitdiff
2018-10-01
gmungoc
JAL-3093 'read-only' annotations when in wrapped mode
tree
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commitdiff
2018-10-01
gmungoc
JAL-3093 refactor (+test) Annotation Labels tooltip...
tree
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commitdiff
2018-10-01
gmungoc
JAL-3093 show annotation tooltips and status message...
tree
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commitdiff
2018-09-28
gmungoc
JAL-3063 service param files read/saved using JAXB...
tree
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commitdiff
2018-09-27
gmungoc
JAL-2791 refactored Export Features to apply all visibi...
tree
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commitdiff
2018-09-26
gmungoc
JAL-3125 tidy up
tree
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commitdiff
2018-09-26
gmungoc
JAL-3125 avoid slider 'rounding' threshold field value
tree
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commitdiff
2018-09-21
gmungoc
JAL-3120 preserve feature colour/mincolour/maxcolour...
bug/JAL-3120restoreFeatureColour
tree
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commitdiff
2018-09-19
Jim Procter
JAL-3010 fix up bad merge from develop
tree
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commitdiff
2018-09-19
Jim Procter
Merge branch 'develop' into features/JAL-3010ontologyFe...
tree
|
commitdiff
2018-09-19
gmungoc
Merge branch 'develop' into features/JAL-3010ontologyFe...
tree
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commitdiff
2018-09-19
gmungoc
JAL-3120 preserve plain colour value when changing...
tree
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commitdiff
2018-09-19
Jim Procter
JAL-2808 JAL-3026 deleted all commented out tab code...
tree
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commitdiff
2018-09-19
gmungoc
JAL-2808 JAL-3032 drop tabbed layout for Colours and...
tree
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commitdiff
2018-09-19
gmungoc
JAL-3063 use JAXB for 'Save as Project' and load projec...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 Save/Load user defined colours using JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 Save/Load user colour scheme using JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 New View via JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 temporary extra menu option to save/load proje...
tree
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commitdiff
2018-09-18
Jim Procter
JAL-3035 more dedasification
tree
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commitdiff
2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
tree
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commitdiff
2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
tree
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commitdiff
2018-09-10
gmungoc
JAL-3099 use Alignment.getVisibleWidth() where wanted
bug/JAL-3099alignmentVisibleWidth
tree
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commitdiff
2018-09-10
gmungoc
JAL-3097 adjust viewport width on hiding columns
bug/JAL-3097blankExtraColumns
tree
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commitdiff
2018-09-10
gmungoc
JAL-3108 fix concurrency bug in Reveal action handler
tree
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commitdiff
2018-09-07
Jim Procter
JAL-3107 update any group associated annotation rows...
tree
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commitdiff
2018-09-07
Jim Procter
JAL-3105 fix for focus transfer after window closed...
tree
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commitdiff
2018-09-06
Jim Procter
JAL-3091 code committed in error (failed patch for...
tree
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commitdiff
2018-09-06
Jim Procter
JAL-3091 release notes for JAL-3104
tree
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commitdiff
2018-09-06
Jim Procter
JAL-2854 compute visible annotation panel height and...
tree
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commitdiff
2018-08-31
Jim Procter
JAL-3095 account for sequence start when highlighting...
tree
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commitdiff
2018-08-31
Jim Procter
Merge branch 'releases/Release_2_10_5_Branch' of source...
tree
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commitdiff
2018-08-31
Jim Procter
java doc and fix for JAL-3095 - region of trimmed RNA...
tree
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commitdiff
2018-08-31
gmungoc
JAL-3003 remove redundant call to drawSelectionGroup
tree
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commitdiff
2018-08-28
gmungoc
JAL-3059 use correct border colour for groups
tree
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commitdiff
2018-08-28
gmungoc
JAL-3003 draw selection group outline on main graphics...
tree
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commitdiff
2018-08-28
gmungoc
JAL-247 comment to clarify wrapped print algorithm
tree
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commitdiff
2018-08-28
gmungoc
JAL-247 print/export wrapped uses common code to draw...
tree
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commitdiff
2018-08-28
gmungoc
JAL-3087 include full alignment height in repeating...
tree
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commitdiff
2018-08-28
gmungoc
JAL-247 draw/print sequence ids now uses common code...
tree
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commitdiff
2018-08-16
gmungoc
JAL-3082 handle regex error, exclusive threshold, unit...
tree
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commitdiff
2018-08-15
gmungoc
JAL-3080 remove tree partition if no groups created
feature/JAL-3080clearTreeGroups
tree
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commitdiff
2018-08-14
gmungoc
JAL-3078 reset Tree font (only!) on Cancel
bug/JAL-3078cancelTreeFont
tree
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commitdiff
2018-07-25
gmungoc
JAL-3073 select columns if dragging sideways in a graph...
bug/JAL-3072scrollThread
tree
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commitdiff
2018-07-25
gmungoc
JAL-3074 don't scroll up/down on drag out of scale...
tree
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commitdiff
2018-07-25
gmungoc
JAL-3072 SeqPanel.stopScrolling on mouse up in scale...
tree
|
commitdiff
2018-07-03
gmungoc
JAL-3054 table tooltip follow mouse in a sensible manner
bug/JAL-3049colourCellTooltip
tree
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commitdiff
2018-06-29
gmungoc
JAL-3049 removed wrong way to set tooltip
tree
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commitdiff
2018-06-29
gmungoc
JAL-3049 JAL-2069 colour icon tooltip including by...
tree
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commitdiff
2018-06-29
gmungoc
JAL-3049 working tooltip on colours column
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3035 - jalview-das is no more !
tree
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commitdiff
2018-06-05
Jim Procter
JAL-3009 news reader thread should be in background...
bugs/JAL-3009_blockingNetworkThreads
tree
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commitdiff
2018-06-05
Jim Procter
JAL-3009 Identifiers.Org retrieval on background thread.
tree
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commitdiff
2018-06-04
gmungoc
JAL-3010 pop-up sort including sub-types when in Summar...
tree
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commitdiff
2018-06-04
gmungoc
JAL-3010 action handler for toggle of 'Apply to sub...
tree
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commitdiff
2018-06-04
gmungoc
JAL-3010 tidy placement of 'Apply to sub-types' checkbox
tree
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commitdiff
2018-06-04
gmungoc
JAL-3010 select/hide columns includes subtypes in Summa...
tree
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commitdiff
2018-06-03
gmungoc
JAL-3010 double-click selects columns for term and...
tree
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commitdiff
2018-06-03
gmungoc
JAL-3010 option to apply colour to all ontology sub...
tree
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commitdiff
2018-06-03
gmungoc
JAL-3010 method extracted for setSubtypesVisibility
tree
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commitdiff
2018-06-03
gmungoc
JAL-3010 apply Visibility to sub-types if set in Summar...
tree
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commitdiff
2018-06-01
gmungoc
JAL-3010 allow list of subtypes to be sortable
tree
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commitdiff
2018-06-01
gmungoc
JAL-3010 options to hide / apply changes to ontology...
tree
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commitdiff
2018-05-31
gmungoc
JAL-2808 don't capture or report min-max for mixed...
tree
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commitdiff
2018-05-31
gmungoc
JAL-2808 pre-fill numeric inequality filter with min...
tree
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commitdiff
2018-05-28
gmungoc
Merge branch 'bug/JAL-797' into develop
tree
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commitdiff
2018-05-28
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2018-05-25
gmungoc
JAL-3002 don't use fastPaint for page up/down
bug/JAL-3002fastPaintWrapped
tree
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-2992panelHeight' into releases...
tree
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-1460_dragndropWindows' into relea...
tree
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commitdiff
2018-05-25
gmungoc
JAL-2992 simpler heuristic for available height
bug/JAL-2992panelHeight
tree
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-2991_exporttosvgwrapview' into...
tree
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commitdiff
2018-05-25
Jim Procter
JAL-1460 temp variable for clearer conditional and...
bug/JAL-1460_dragndropWindows
tree
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commitdiff
2018-05-25
Jim Procter
JAL-1460 javadoc
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 tidied up the use of windows link file parser
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 more complete drag'n'drop debugging info and...
tree
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commitdiff
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