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added feature gradient colours and sortby feature score/density to feature settings...
[jalview.git]
/
src
/
jalview
/
gui
/
2009-03-31
jprocter
prototype for store/restore of feature colour gradient...
tree
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commitdiff
2009-03-17
jprocter
allow configuration of graduated colour
tree
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commitdiff
2009-03-17
jprocter
quantitative shading of features by GraduatedColor
tree
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commitdiff
2009-03-17
jprocter
prototype dialog for setting feature display shading...
tree
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commitdiff
2009-03-17
jprocter
sortbytree view setting and action added - setting...
tree
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commitdiff
2009-02-24
jprocter
better tooltip display and placement, cope with linkOnl...
tree
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commitdiff
2009-02-24
jprocter
debugging selection message send/receive
tree
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commitdiff
2009-02-24
jprocter
only display unique url links (both in label and in...
tree
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commitdiff
2009-02-24
jprocter
bugfix for occasional nullpointer exceptions when selec...
tree
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commitdiff
2009-02-24
jprocter
change method signature to allow caller to test if...
tree
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commitdiff
2009-02-06
jprocter
updated jalview reference
tree
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commitdiff
2009-02-06
jprocter
showUnconserved view and group setting
tree
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commitdiff
2009-01-09
jprocter
hack to completely disable calculation of consensus...
tree
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commitdiff
2009-01-09
jprocter
bugfix
tree
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commitdiff
2009-01-07
jprocter
ensure that the DAS sequence source checkbox is checked...
tree
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commitdiff
2009-01-07
jprocter
check for features on the retrieved sequences
tree
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commitdiff
2009-01-07
jprocter
refactor
tree
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commitdiff
2009-01-07
jprocter
added higher level method to enable the display of...
tree
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commitdiff
2008-12-19
jprocter
experimental: sort by feature UI in feature settings...
tree
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commitdiff
2008-12-19
jprocter
new sort by length method, justify edit menu entries...
tree
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commitdiff
2008-12-19
jprocter
catch null pointer exception when no colourscheme is...
tree
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commitdiff
2008-12-15
jprocter
warning for failed parsing of newick strings
tree
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commitdiff
2008-12-15
jprocter
new callback handler allowing threads that request...
tree
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commitdiff
2008-12-08
jprocter
display feature score in tooltip
tree
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commitdiff
2008-12-08
jprocter
experimental buttons for sort on score/density and...
tree
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commitdiff
2008-12-05
jprocter
support for multiple accession retrieval from a databas...
tree
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commitdiff
2008-12-04
jprocter
fetch database references for all EBI db + selected...
tree
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commitdiff
2008-12-04
jprocter
das source browser uses local source method from jalvie...
tree
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commitdiff
2008-11-12
jprocter
selection sending and receiving, autoscrolling to highl...
tree
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commitdiff
2008-11-12
jprocter
selection sending and receiving, autoscrolling to highl...
tree
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commitdiff
2008-11-12
jprocter
selection sending
tree
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commitdiff
2008-11-12
jprocter
new ID constructor and selection sending
tree
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commitdiff
2008-11-12
jprocter
new constructors for setting IDs
tree
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commitdiff
2008-11-12
jprocter
new window discovery and alignment view navigation...
tree
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commitdiff
2008-11-12
jprocter
jar inputstream provider enabling multiple jar entries...
tree
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commitdiff
2008-09-09
jprocter
show non-positional features with same code as positona...
tree
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commitdiff
2008-09-09
jprocter
refactored feature tooltip generation code to static...
tree
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commitdiff
2008-09-09
jprocter
non-positional features are displayed with additional...
tree
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commitdiff
2008-09-09
jprocter
make URL links from description string when link is...
tree
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commitdiff
2008-09-08
jprocter
view settings in view submenu and user preferences...
tree
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commitdiff
2008-09-08
jprocter
introduced and commented out code for generating URLs...
tree
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commitdiff
2008-09-04
jprocter
merge from 2_4_Release branch
tree
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commitdiff
2008-08-26
jprocter
set title of viewer frame after file has been loaded...
tree
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commitdiff
2008-08-26
jprocter
future bug fix todo
tree
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commitdiff
2008-08-26
jprocter
new thread for initting of DBRefFetcher with latest...
tree
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commitdiff
2008-08-26
jprocter
added singleton access method to retrieve the latest...
tree
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commitdiff
2008-08-26
jprocter
tooltip for fetch db refs and more generic regex for...
tree
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commitdiff
2008-08-20
jprocter
tooltip displays formatted annotation row description...
tree
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commitdiff
2008-08-19
jprocter
beginning of fix for embl/cds/highlighting IO in https...
tree
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commitdiff
2008-08-19
jprocter
fix for arrayoutofbounds bug when secondary structure...
tree
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commitdiff
2008-08-19
jprocter
regex links for launching URL from single click on...
tree
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commitdiff
2008-08-15
jprocter
update text and version checker
tree
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commitdiff
2008-08-15
jprocter
dialog size on macs
tree
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commitdiff
2008-08-15
jprocter
check for crossreferences every time the menus are...
tree
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commitdiff
2008-08-15
jprocter
catch invalid URL link exception properly
tree
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commitdiff
2008-08-15
jprocter
increase height of dialog
tree
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commitdiff
2008-08-15
jprocter
allow '|' in regex for URL links to be recovered from...
tree
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commitdiff
2008-08-13
jprocter
check for null viewport on dataset recovery
tree
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commitdiff
2008-08-13
jprocter
ensure input data can be recovered for tree and PCA...
tree
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commitdiff
2008-08-13
jprocter
do not try to cancel jobs that cannot be cancelled
tree
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commitdiff
2008-08-11
jprocter
regular expression based URL link generation
tree
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commitdiff
2008-08-06
jprocter
generation of additional URLs for DBRefs on a sequence...
tree
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commitdiff
2008-08-05
jprocter
new vamsas session does not open a dialog box
tree
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commitdiff
2008-08-05
jprocter
ensure das sequence sources are refreshed when das...
tree
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commitdiff
2008-08-04
jprocter
pfam seed and full alignment retrieval and nicer orderi...
tree
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commitdiff
2008-08-01
jprocter
new SequenceFetcher gui and visual delay indication...
tree
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commitdiff
2008-08-01
jprocter
interface for windows that display progress bars
tree
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commitdiff
2008-07-31
jprocter
use canonical DbSource name in GUI box, and ensure...
tree
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commitdiff
2008-07-18
jprocter
Sequence label colour stored for each sequence group
tree
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commitdiff
2008-06-30
jprocter
javadoc and constraint to ensure annotation labels...
tree
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commitdiff
2008-05-12
jprocter
fixed Jalview project archive bug where alignment view...
tree
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commitdiff
2008-04-29
jprocter
comments and version wget ping timeout fix for when...
tree
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commitdiff
2008-04-29
jprocter
added SeqSearch service interface. Documented and refac...
tree
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commitdiff
2008-04-25
jprocter
potential fix for hang on opening of application window...
tree
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commitdiff
2008-04-21
jprocter
added centre annotation labels menu entry (and commente...
tree
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commitdiff
2008-04-17
jprocter
todo for refactoring webservice GUI creation mechanism
tree
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commitdiff
2008-02-22
jprocter
sequenceId is a string, not an integer - allows generat...
tree
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commitdiff
2008-02-22
jprocter
probably unnecessary optimisation (SequenceGroup.addSeq...
tree
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commitdiff
2008-02-22
jprocter
On 'save' menu entry check to see if fileformat is...
tree
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commitdiff
2008-01-29
jprocter
flag to indicate if errors are raised as warning dialog...
tree
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commitdiff
2008-01-29
jprocter
explicitly allow access to showMemoryUsage flag in...
tree
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commitdiff
2008-01-29
jprocter
javadoc
tree
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commitdiff
2008-01-21
jprocter
javadoc
tree
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commitdiff
2008-01-11
jprocter
memory monitor, garbage collection and changed menu...
tree
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commitdiff
2007-12-21
jprocter
sequence db fetcher metadata for multiple sequence...
tree
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commitdiff
2007-12-18
jprocter
incorrect colour-by-sequence when gaps are present...
tree
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commitdiff
2007-11-28
jprocter
bugfix
tree
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commitdiff
2007-11-24
jprocter
only show bootstrap values if they are valid!
tree
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commitdiff
2007-11-16
jprocter
refactored ebi soap client and AbstractSequenceFetcher...
tree
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commitdiff
2007-11-16
jprocter
todo for sortbyPID operating on current selection rathe...
tree
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commitdiff
2007-11-12
jprocter
added mechanism to initiate DAS feature fetching progra...
tree
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commitdiff
2007-11-12
jprocter
public access to static getAlignFrames method.
tree
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commitdiff
2007-11-12
jprocter
public method to indicate if there are progress bars...
tree
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commitdiff
2007-11-12
jprocter
publicly accessible flag to indicate if a registry...
tree
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commitdiff
2007-11-12
jprocter
bugfix for occasional race condition causing exception...
tree
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commitdiff
2007-11-12
jprocter
comments
tree
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commitdiff
2007-11-07
jprocter
fix accidental breakage of annotation panel redraw...
tree
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commitdiff
2007-11-07
jprocter
attempt to make fastPaint method thread safe
tree
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commitdiff
2007-11-05
jprocter
vamsas connects and updates are threaded with a progres...
tree
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commitdiff
2007-10-31
jprocter
rejiggered loadDataFile and parseFeatureFile so JNet...
tree
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commitdiff
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