Check hiddenSequence before placing in tmp
[jalview.git] / src / jalview / gui /
2006-10-25 amwaterhouseGet sequence in routine
2006-10-25 amwaterhouseviewport.hasHiddenColumns updated after undo/redo performed
2006-10-25 amwaterhouseEditCommand added to AlignFrame
2006-10-24 amwaterhouseMust set alignIndex before delete takes place
2006-10-24 amwaterhouseUse EditCommand.Cut
2006-10-24 amwaterhouseHistoryItem replaced by CommandI
2006-10-24 amwaterhouseEditCommand implemented
2006-10-24 amwaterhousemust translate graphics back the same amountcvs diff...
2006-10-24 amwaterhouseChange Case is undoable
2006-10-24 amwaterhouseSequenceIndex might be beyond old height
2006-10-24 amwaterhouseMust catch image outOfMemoryError
2006-10-18 amwaterhouseshowqual, showcons never used
2006-10-18 amwaterhouseremove html and body from tooltip
2006-10-18 amwaterhousenew feature args
2006-10-18 amwaterhouseCan set description for new features
2006-10-18 amwaterhouseFaded anntotations when recalculating
2006-10-18 amwaterhouseset conserve and quality null if outofmemory
2006-10-18 amwaterhouseNo longer a FeatureListener
2006-10-12 amwaterhouseshowQuality may be updated during archive file load
2006-10-12 amwaterhouseAdd features from Popupmenu
2006-10-12 amwaterhouseUse i, not index if not representedSeqs
2006-10-12 amwaterhouseIf conservation is null, disable Blosum62 and conservat...
2006-10-12 amwaterhouseAnnotasiont[j] might be null
2006-10-12 amwaterhouseLocal adjustForhiddenSeqs routine
2006-10-12 amwaterhouseRepresentGroup count items
2006-10-10 amwaterhouseNo need to find index when deleting
2006-10-10 amwaterhouseCalculate alWidth earlier
2006-10-10 amwaterhouseMust repaint whole alignPanel
2006-10-10 amwaterhouseOnly getGroups once if groupEditingcvs update
2006-10-10 amwaterhouseaaIndex replaces aaHash
2006-10-10 amwaterhouseConsensus and conservation updated in threads
2006-10-09 jprocterimported Vamsas bindings and alpha vamsas client code...
2006-10-09 jprocterset firstColumn property for an alignmentView object.
2006-10-06 jprocterAdded filter so that input to a JPred job is *solely...
2006-10-06 amwaterhouseAAFrequency optimized
2006-10-05 amwaterhouseMultiple Views
2006-10-03 amwaterhouseCheck annotation is editable
2006-09-27 jprocterfixed tree building exception when one residue or a...
2006-09-18 amwaterhouseDraw hidden column marker correctly
2006-09-18 amwaterhouseclick node to select sequences
2006-09-12 amwaterhousehideSequence hide all before recalc consensus
2006-09-12 amwaterhouseAllow alt for group editing
2006-09-11 amwaterhouseComment out lower case colouring for bug fix release
2006-09-11 amwaterhouseRemove system.outs
2006-09-11 amwaterhouseget idWidth should use italic font when getting size
2006-09-11 amwaterhousevisWidth allows borders to be drawn around offscreen...
2006-09-11 amwaterhouseRemove system.out
2006-09-11 amwaterhousegetVisibleIdWidth() for making images
2006-09-07 jprocteradded copy consensus sequence to consensus annotation...
2006-09-01 amwaterhouseFeature Settings
2006-08-30 amwaterhouseGraphHeight might be zero
2006-08-30 amwaterhouseUser colours are case sensitive
2006-08-29 amwaterhouseCan shrink graph to zero
2006-08-29 amwaterhousecreateMapping alreadyMapped
2006-08-29 amwaterhouseAdditional repaint
2006-08-29 amwaterhousejnetfile can be loaded onto alignment
2006-08-22 amwaterhouseTo uppercase only visible
2006-08-22 amwaterhouseRemove group when hiding cols from scalePanel
2006-08-22 jprocteroff by one bug in hiden column unmarshalling
2006-08-21 amwaterhouseheader updated
2006-08-21 amwaterhousevalidate groupPanel
2006-08-21 amwaterhousevalidate groupPanel
2006-08-21 amwaterhouseAdd uniprot DBref
2006-08-21 jprocterRefactored Jnet and added hidden columns support.
2006-08-18 amwaterhouseCheck colourScheme is not null - jalview prior 2.5...
2006-08-18 amwaterhouseOnly discover DAS sources if panel shown
2006-08-18 amwaterhouseonly set new layout if 2 buttons visible
2006-08-17 amwaterhouseH key updates
2006-08-17 amwaterhouseIf no annotation exists
2006-08-17 amwaterhouseHold onto selected region when hiding all columns only
2006-08-17 jproctermoved visible sub-alignment extraction and update from...
2006-08-17 amwaterhouseMonospace check
2006-08-17 amwaterhouse1 more pixel allowed between chars and graph
2006-08-17 amwaterhousecontrol and shift
2006-08-17 amwaterhouseDont set group null hideCOls
2006-08-17 amwaterhouseOptionPanes invokeLater
2006-08-17 amwaterhouseControl and alt for toggle hide
2006-08-16 amwaterhouseFire alignment changed if seqs hidden / revealed
2006-08-15 jproctermake annotation label font size follow alignment font...
2006-08-15 jprocterensure that close widget is available for jobs that...
2006-08-15 amwaterhouseSetselectiongroup null on hide
2006-08-15 amwaterhouseH key to hide / reveal
2006-08-15 amwaterhouseSelect revealed seqs
2006-08-15 amwaterhouseWRITEABLE_FORMATS and READABLE_FORMATS string []
2006-08-14 amwaterhouseStockholm parser added
2006-08-14 jprocterfunction to indicate job has finished but no results...
2006-08-14 amwaterhousenew feature added
2006-08-14 amwaterhouseStop loading must be before JOptionPane, 1.5 bug
2006-08-14 amwaterhouseNo need to check selection group size
2006-08-14 amwaterhousefindingFeatures flag set
2006-08-13 jprocterfixed end-residue bug and subjob panel names bug
2006-08-11 jproctermultiple web service jobs from visible blocks of an...
2006-08-11 amwaterhouseUpdate overview on conservation/pid slider mouseRelease
2006-08-10 amwaterhouseControl and shift for col selection
2006-08-10 amwaterhouseOnly add 1 feature settings table
2006-08-10 amwaterhouseInvert column selection
2006-08-09 amwaterhouseMust save all the feature settings
2006-08-09 amwaterhouseCheck if groups have already been added or not
2006-08-09 amwaterhouseFix for local sources with no capabilities
2006-08-09 amwaterhouseIcon drawing updated
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