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JAL-1264 exclude score-only from 'Add Reference Annotations'
[jalview.git] / src / jalview / gui /
2018-05-15 gmungocJAL-1264 exclude score-only from 'Add Reference Annotat... tree | commitdiff
2018-05-14 gmungocJAL-2989 refactoring to reduce code duplication tree | commitdiff
2018-05-14 gmungocJAL-2711 show short file names in search database combo box tree | commitdiff
2018-05-14 gmungocJAL-2989 support value display names for Option or... tree | commitdiff
2018-05-11 gmungocJAL-2985 show label instead of checkbox for a required... tree | commitdiff
2018-05-10 gmungocJAL-591 reduced updating by checking/setting 'updating... tree | commitdiff
2018-05-10 gmungocJAL-2629 handle decline 'Add Database' tree | commitdiff
2018-05-10 gmungocJAL-591 show choice list with a single option tree | commitdiff
2018-05-09 gmungocJAL-2714 HMMSearch cutoff by E-Value, Score or None tree | commitdiff
2018-05-08 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-05-07 Jim ProcterJAL-2960 don’t override a swing method and create infin... tree | commitdiff
2018-05-04 Jim ProcterJAL-2948 transfer features/annotation is now available... tree | commitdiff
2018-05-04 Jim ProcterJAL-2960 raise the structure view after adding structur... tree | commitdiff
2018-04-30 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_... tree | commitdiff
2018-04-24 gmungocJAL-2959 no Print dialog shown if Page Format is Cancelled tree | commitdiff
2018-04-24 gmungocJAL-591 use constant for Preferences key tree | commitdiff
2018-04-24 gmungocJAL-2616 unused field removed tree | commitdiff
2018-04-23 gmungocJAL-2956 save/restore HMMER profile to/from Jalview... tree | commitdiff
2018-04-23 gmungocJAL-2957 don't validate input on arrow keys tree | commitdiff
2018-04-23 gmungocJAL-591 ensure slider hidden if text input field only tree | commitdiff
2018-04-20 gmungocJAL-591 slider scale factor now derived from min-max... tree | commitdiff
2018-04-20 gmungocJAL-591 tidy and comment code tree | commitdiff
2018-04-20 gmungocJAL-591 OptionBox FlowLayout, tweaks to wrapping of... tree | commitdiff
2018-04-19 gmungocJAL-591 utility method renamed and slightly generalised tree | commitdiff
2018-04-18 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-04-17 gmungocMerge branch 'features/mchmmer' of https://source.jalvi... tree | commitdiff
2018-04-17 gmungocJAL-2629 choice of hmm profile now a parameter not... tree | commitdiff
2018-04-17 Mungo CarstairsJAL-2937 working Cygwin bash execution of hmmbuild... tree | commitdiff
2018-04-16 gmungocJAL-2629 JAL-2937 remove redundant is/setHMMConsensusSe... tree | commitdiff
2018-04-16 gmungocJAL-2937 use preferences for presets, simplify some... tree | commitdiff
2018-04-12 gmungocJAL-1847 minor post-review updates tree | commitdiff
2018-04-12 gmungocJAL-2944 tidies for review comments tree | commitdiff
2018-04-09 Mungo CarstairsJAL-2937 Cygwin path preference, method refactoring tree | commitdiff
2018-04-09 Mungo CarstairsJAL-2069 typo tree | commitdiff
2018-04-09 Jim ProcterJAL-2944 ’new view’ and ‘add to view’ button rather... tree | commitdiff
2018-04-09 Jim ProcterJAL-1847 superpose checkbox in structure chooser tree | commitdiff
2018-04-09 Jim ProcterJAL-1847 JAL-2944 make superposition step a configurabl... tree | commitdiff
2018-04-05 Jim ProcterJAL-2945 provide access to last highlighted results tree | commitdiff
2018-04-05 Jim ProcterJAL-2944 open selected structures in existing or a... tree | commitdiff
2018-04-05 Jim ProcterJAL-2944 methods to check existence and get a title... tree | commitdiff
2018-04-05 Jim ProcterJAL-2944 allow StructureViewer proxy to be created... tree | commitdiff
2018-04-05 Jim ProcterJAL-2944 get viewer’s title via toString() tree | commitdiff
2018-04-05 Jim ProcterJAL-2944 expose UI update methods in api tree | commitdiff
2018-04-05 Jim ProcterJAL-2944 remove modal prompt logic and expose methods... tree | commitdiff
2018-04-05 Jim ProcterJAL-2944 pull up structure viewer discovery routine... tree | commitdiff
2018-03-30 gmungocJAL-2629 combine with/without defaults in one method... tree | commitdiff
2018-03-30 gmungocJAL-2939 field/method naming more consistent tree | commitdiff
2018-03-30 gmungocJAL-2629 select HMM selects sequence under cursor tree | commitdiff
2018-03-26 gmungocJAL-2939 pull up set/IsNormalise[HMM]SequenceLogo tree | commitdiff
2018-03-26 gmungocJAL-2939 unused action handler methods removed tree | commitdiff
2018-03-22 gmungocJAL-2929 unit test, tidy unused/unneeded fields/parameters tree | commitdiff
2018-03-21 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-03-21 Jim ProcterJAL-2754 fix eclipse compilation error about referencin... tree | commitdiff
2018-03-21 gmungocJAL-2629 tweaks to Information annotation updating tree | commitdiff
2018-03-20 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-03-16 gmungocMerge remote-tracking branch 'origin/releases/Release_2... tree | commitdiff
2018-03-16 gmungocJAL-2922 update FeatureRenderer and repaint feature... tree | commitdiff
2018-03-16 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-03-16 gmungocMerge branch 'bug/JAL-2865removeGC' into develop tree | commitdiff
2018-03-16 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2018-03-13 gmungocJAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH) tree | commitdiff
2018-03-08 gmungocMerge remote-tracking branch 'origin/releases/Release_2... merges/JAL-2906_update2_11_from_2_10_4 tree | commitdiff
2018-03-08 gmungocJAL-2930 use MouseWheelEvent.getPreciseWheelRotation... tree | commitdiff
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10... tree | commitdiff
2018-03-07 gmungocJAL-2922 [2] not [1] for Boolean column of table bugs/JAL-2922 tree | commitdiff
2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10... tree | commitdiff
2018-03-07 gmungocMerge branch 'bug/JAL-2924nullTooltip' into releases... tree | commitdiff
2018-03-07 gmungocJAL-2913 use FIGURE_USERIDWIDTH for fixed id width... tree | commitdiff
2018-03-07 gmungocJAL-2629 storage and lifecycle of alignment/group HMM... tree | commitdiff
2018-03-01 gmungocJAL-2629 revising hmmer annotation updating (wip) tree | commitdiff
2018-02-28 gmungocJAL-2924 no tooltip over null annotation positions bug/JAL-2924nullTooltip tree | commitdiff
2018-02-27 gmungocJAL-2717 JAL-2668 fixes to HMMER colour scheme display... tree | commitdiff
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104 tree | commitdiff
2018-02-27 Jim Procterfix for JAL-2922 - update states all at once and then... tree | commitdiff
2018-02-22 Jim ProcterMerge branch 'feature/JAL-984splitAdjuster' into releas... tree | commitdiff
2018-02-22 Jim ProcterJAL-984 ID width adjuster needs to be white ! tree | commitdiff
2018-02-22 Jim ProcterMerge branch 'bug/JAL-2666' into releases/Release_2_10_... tree | commitdiff
2018-02-22 Jim ProcterMerge branch 'feature/JAL-984splitAdjuster' into releas... tree | commitdiff
2018-02-22 Jim ProcterJAL-984 remove all references to idwidth.gif and use... tree | commitdiff
2018-02-22 Jim ProcterMerge branch 'feature/JAL-984splitAdjuster' into releas... tree | commitdiff
2018-02-22 Jim ProcterJAL-984 remove commented/unnecessary if clause tree | commitdiff
2018-02-22 gmungocJAL-2629 tidy unit tests, constants etc tree | commitdiff
2018-02-21 Jim ProcterMerge branch 'bug/JAL-2778again' into releases/Release_... tree | commitdiff
2018-02-21 Jim ProcterJAL-2778 reinstate transparent windows to avoid ugly... bug/JAL-2778again tree | commitdiff
2018-02-21 gmungocJAL-2629 simplifying method signatures in Hmmer command... tree | commitdiff
2018-02-21 kiramtJAL-2778 Adjust cursor changes in overview panel tree | commitdiff
2018-02-21 kiramtJAL-2778 Revert back to old synchronisation tree | commitdiff
2018-02-20 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-02-20 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-02-19 gmungocJAL-2629 refactoring of Hmmer preferences tree | commitdiff
2018-02-19 gmungocJAL-2629 partial refactoring of Hmmer command classes tree | commitdiff
2018-02-13 Jim ProcterJAL-2781 refactor ‘trim retrieved sequence’ preference... tree | commitdiff
2018-02-08 gmungocJAL-2666 basic initial fix for split screen scroll bug tree | commitdiff
2018-02-07 Jim ProcterJAL-2902 catch case where viewer is closed (therefore... tree | commitdiff
2018-02-07 Jim ProcterJAL-2902 thread off dialog close op to avoid deadlock... tree | commitdiff
2018-02-07 gmungocJAL-2808 ensure pattern field re-enabled when needed... tree | commitdiff
2018-02-07 Jim ProcterJAL-2902 - isBusy and hasMapping methods so client... tree | commitdiff
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