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ensure there's always a space between ID and feature/descr/dbref list.
[jalview.git]
/
src
/
jalview
/
gui
/
2007-10-26
jprocter
use new utility class for platform info
tree
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commitdiff
2007-10-26
jprocter
updated client which allows XML validation flags to...
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commitdiff
2007-10-24
jprocter
thread for product retrieval
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commitdiff
2007-10-04
jprocter
selected region output also supports generation of...
tree
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commitdiff
2007-10-04
jprocter
refactored list of file extensions and file format...
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commitdiff
2007-10-04
jprocter
edit label/displayChar contains existing character...
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commitdiff
2007-10-04
jprocter
refactored invertColumnSelection as an object method
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commitdiff
2007-10-02
jprocter
added colSel as a parameter formatAdaptor print functio...
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commitdiff
2007-09-25
jprocter
added store of undo/redo hash for each alignment so...
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commitdiff
2007-09-25
jprocter
primitive methods for getting current undo/redo state...
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commitdiff
2007-09-14
jprocter
added support for loading a vamsas document into a...
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commitdiff
2007-09-10
jprocter
choose a particular vamsas session, load, or create...
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commitdiff
2007-09-07
jprocter
added action for saving the current session as a vamsas...
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commitdiff
2007-09-06
jprocter
fixes bootstrap bug noted by Chunlong Chen in email...
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commitdiff
2007-08-31
jprocter
added CSV export of annotation rows to application.
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commitdiff
2007-08-30
jprocter
*really* make sure database references are stored and...
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commitdiff
2007-08-30
jprocter
ensure codon mappings and database references are merge...
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commitdiff
2007-08-30
jprocter
store dataset references, sequence dataset ids, and...
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commitdiff
2007-08-22
jprocter
popup for non-fatal tree parsing error
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commitdiff
2007-08-22
jprocter
quick fix for exceptions due to invalid embl refs
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commitdiff
2007-08-22
jprocter
fix serious repetitive exceptions if user closes colour...
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commitdiff
2007-08-22
jprocter
catch occasional -ve imgWidth exception
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commitdiff
2007-08-13
jprocter
fixed typo in new 2_3 startup file default value
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commitdiff
2007-08-02
jprocter
javadoc and bugfix for 'save' when jalview is default...
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commitdiff
2007-08-01
jprocter
ensure current dataset reference is passed to the cross...
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commitdiff
2007-07-25
jprocter
bugfix for vamsas demo and IO rearrangement for AMSAFil...
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commitdiff
2007-07-13
jprocter
pickmanager on sequence and alignment position, vamsas...
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commitdiff
2007-07-13
jprocter
updated to iscb demo vamsas-client version
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commitdiff
2007-06-17
jprocter
vamsas mouseOvers
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commitdiff
2007-06-17
jprocter
enable mouseover between DNA coding regions and transla...
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commitdiff
2007-06-17
jprocter
mouseOver highlighting and broadcasting efficiency
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commitdiff
2007-06-17
jprocter
thread safety during repaint
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commitdiff
2007-06-17
jprocter
null pointer exception fix
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commitdiff
2007-05-22
jprocter
refactored document objects and bugfix on jvdataset...
tree
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commitdiff
2007-05-22
amwaterhouse
DONT SET PICKING LABEL
tree
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commitdiff
2007-05-18
jprocter
update to and from document (and remove deprecated...
tree
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commitdiff
2007-05-18
jprocter
removed uneccessary vamsasLoad commented out.
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commitdiff
2007-05-17
jprocter
refining - still debugging.
tree
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commitdiff
2007-05-17
jprocter
use of proper vamsas client API by Jalview
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commitdiff
2007-05-17
jprocter
modified castor-1.1 library and refactored uk.ac.vamsas
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commitdiff
2007-05-15
amwaterhouse
SequenceListener highlights SearchResults, not just...
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commitdiff
2007-05-10
jprocter
documentation
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commitdiff
2007-05-10
amwaterhouse
visibility setting
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commitdiff
2007-05-10
amwaterhouse
Keep record of last tooltip
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commitdiff
2007-05-10
amwaterhouse
Visible state of annotation
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commitdiff
2007-05-10
amwaterhouse
Add show all hidden menu
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commitdiff
2007-05-10
amwaterhouse
Dont duplicate annotations in multiple views
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commitdiff
2007-05-09
amwaterhouse
minor formatting of tooltip
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commitdiff
2007-05-08
amwaterhouse
check for null annotations
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commitdiff
2007-05-08
amwaterhouse
set picking label
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commitdiff
2007-05-08
amwaterhouse
instant update when seq colour is pressed
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commitdiff
2007-05-08
amwaterhouse
must specify .CA
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commitdiff
2007-05-08
amwaterhouse
small sphere for alpha carbon
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commitdiff
2007-05-07
amwaterhouse
Image size must allow for scale height
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commitdiff
2007-05-07
amwaterhouse
dif is never used
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commitdiff
2007-05-07
amwaterhouse
Allow for large font sizes
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commitdiff
2007-05-07
amwaterhouse
dont use gold highlights
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commitdiff
2007-05-07
amwaterhouse
Max width for tooltip
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commitdiff
2007-05-07
amwaterhouse
still trying to prevent null painting
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commitdiff
2007-05-07
amwaterhouse
Use id hash to add pdb mappings back to alignment
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commitdiff
2007-05-07
amwaterhouse
PDBViewer available if necessary
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commitdiff
2007-05-04
amwaterhouse
Check bounds of loaded comp
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commitdiff
2007-05-04
amwaterhouse
remove system.out
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commitdiff
2007-05-04
amwaterhouse
added
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commitdiff
2007-05-04
amwaterhouse
Add dbrefs before zero length features
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commitdiff
2007-05-04
amwaterhouse
Rename AppJMol to AppJmol - also AppJmol works with...
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commitdiff
2007-05-04
amwaterhouse
Renamed to AppJmol
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commitdiff
2007-05-04
amwaterhouse
New example file for version 2.3
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commitdiff
2007-05-04
amwaterhouse
Splash screen is not added using normal method, prevent...
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commitdiff
2007-05-03
amwaterhouse
pdb id toUpperCase
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commitdiff
2007-05-03
amwaterhouse
optimize repaints
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commitdiff
2007-05-03
amwaterhouse
remove system.out
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commitdiff
2007-05-02
amwaterhouse
Allow expansion of textarea for many sequence input
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commitdiff
2007-05-02
amwaterhouse
convert space to gapchar
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commitdiff
2007-05-02
jprocter
undo stackempty error fix, refactored do and undo(...
tree
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commitdiff
2007-05-02
jprocter
refactored do and undo() method to take array of alignm...
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commitdiff
2007-05-02
jprocter
copy only the sequence associated alignment annotation...
tree
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commitdiff
2007-05-01
amwaterhouse
Multiple views/hidden region/undo out of index bug
tree
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commitdiff
2007-05-01
amwaterhouse
Can specify PDB chain to map sequence to - only used...
tree
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commitdiff
2007-05-01
jprocter
sort-by-score works of sequence-annotation, not alignme...
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commitdiff
2007-05-01
amwaterhouse
Save seqset properties
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commitdiff
2007-04-30
jprocter
fixed deadlock
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commitdiff
2007-04-30
jprocter
rebuild sort by scores menu when new annotation is...
tree
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commitdiff
2007-04-27
amwaterhouse
remove excessive painting
tree
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commitdiff
2007-04-27
amwaterhouse
Check pdbid size >0
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commitdiff
2007-04-27
amwaterhouse
Move repaint in thread
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commitdiff
2007-04-27
amwaterhouse
Put alignmentProperties in scrollpane
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commitdiff
2007-04-27
amwaterhouse
Check feature group is visible for mouse over features
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commitdiff
2007-04-27
amwaterhouse
remove System.out
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commitdiff
2007-04-27
jprocter
newlines in alignment properties converted to <br>
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commitdiff
2007-04-27
amwaterhouse
hide the initial window after selection made
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commitdiff
2007-04-27
amwaterhouse
Annotation gradient will use direct colours if no graph...
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commitdiff
2007-04-27
amwaterhouse
hide annotation colouring options
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commitdiff
2007-04-27
amwaterhouse
Dont colour labels
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commitdiff
2007-04-26
jprocter
added/tested sort by scores menu and added basic extrac...
tree
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commitdiff
2007-04-26
jprocter
use hasScore method to test presence of score in annota...
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commitdiff
2007-04-26
amwaterhouse
check for null ss character
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commitdiff
2007-04-26
amwaterhouse
Edit seqs
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commitdiff
2007-04-26
jprocter
groovy support without compile-time dependency.
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commitdiff
2007-04-25
jprocter
getContentPane().add alignmentProperties popup.
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commitdiff
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