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[jalview.git]
/
src
/
jalview
/
gui
/
2009-08-21
jprocter
bugfix
tree
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commitdiff
2009-08-21
jprocter
todo for 2.5
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commitdiff
2009-08-21
jprocter
null pointer exception bug fix
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commitdiff
2009-08-03
jprocter
fix feature creation for selected region beyond end...
tree
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commitdiff
2009-07-24
jprocter
update annotation when group state is changed
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commitdiff
2009-07-24
jprocter
colour by label prototype flag
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commitdiff
2009-07-24
jprocter
catch null pointer exception in headless context
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commitdiff
2009-07-24
jprocter
get consensus sequence and set ignore gaps flag for...
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commitdiff
2009-07-24
jprocter
annotation update method synchronises group annotation
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commitdiff
2009-07-24
jprocter
headless warning messages, prototype group annotation...
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commitdiff
2009-07-24
jprocter
refactored conservation thread, added showgroupannotati...
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commitdiff
2009-07-24
jprocter
conservation thread refactored from AlignViewport
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commitdiff
2009-06-24
jprocter
can use whitespace, comma or semicolon to separate IDs
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commitdiff
2009-06-19
jprocter
selection handler and sender bugfix
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commitdiff
2009-06-19
jprocter
todo
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commitdiff
2009-06-19
jprocter
selections sent when mouse is released (drags on ID...
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commitdiff
2009-06-19
jprocter
progress bars (still need to be threaded properly)...
tree
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commitdiff
2009-06-19
jprocter
smoother scroll-to-position action
tree
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commitdiff
2009-06-19
jprocter
drag'n'drop a URL on to an alignment
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commitdiff
2009-06-12
jprocter
methods for importing anonymous vamsas documents into...
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commitdiff
2009-06-12
jprocter
nullpointer bugfix (possibly not needed - was an error...
tree
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commitdiff
2009-06-12
jprocter
recover pdb from jalview-xml in vamsas doc
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commitdiff
2009-06-12
jprocter
send selection on drag over sequence ids
tree
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commitdiff
2009-06-12
jprocter
retrieve and init vamsas session from vdoc at URL
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commitdiff
2009-06-09
jprocter
fix null pointer when new view is created then closed...
tree
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commitdiff
2009-06-08
jprocter
refactored public methods for non-interactive import...
tree
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commitdiff
2009-06-08
jprocter
refactored for non-interactive import and initiation...
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commitdiff
2009-06-08
jprocter
sequence scores only shown if they vary. shift stops...
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commitdiff
2009-06-08
jprocter
debug messages and graceful recovery when structure...
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commitdiff
2009-06-08
jprocter
better thread safety for tooltip. apply gpl development...
tree
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commitdiff
2009-06-08
jprocter
ensure listeners are deregistered when panel is closed...
tree
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commitdiff
2009-06-08
jprocter
ensure listeners are deregistered when panel is closed...
tree
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commitdiff
2009-06-08
jprocter
apply gpl development license
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commitdiff
2009-06-01
jprocter
more graduated feature support
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commitdiff
2009-06-01
jprocter
properly export graduated colour features
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commitdiff
2009-06-01
jprocter
prototype function for relabelling treenodes with diffe...
tree
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commitdiff
2009-06-01
jprocter
better tooltip placement in alignment window
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commitdiff
2009-03-31
jprocter
prototype for store/restore of feature colour gradient...
tree
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commitdiff
2009-03-17
jprocter
allow configuration of graduated colour
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commitdiff
2009-03-17
jprocter
quantitative shading of features by GraduatedColor
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commitdiff
2009-03-17
jprocter
prototype dialog for setting feature display shading...
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commitdiff
2009-03-17
jprocter
sortbytree view setting and action added - setting...
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commitdiff
2009-02-24
jprocter
better tooltip display and placement, cope with linkOnl...
tree
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commitdiff
2009-02-24
jprocter
debugging selection message send/receive
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commitdiff
2009-02-24
jprocter
only display unique url links (both in label and in...
tree
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commitdiff
2009-02-24
jprocter
bugfix for occasional nullpointer exceptions when selec...
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commitdiff
2009-02-24
jprocter
change method signature to allow caller to test if...
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commitdiff
2009-02-06
jprocter
updated jalview reference
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commitdiff
2009-02-06
jprocter
showUnconserved view and group setting
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commitdiff
2009-01-09
jprocter
hack to completely disable calculation of consensus...
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commitdiff
2009-01-09
jprocter
bugfix
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commitdiff
2009-01-07
jprocter
ensure that the DAS sequence source checkbox is checked...
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commitdiff
2009-01-07
jprocter
check for features on the retrieved sequences
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commitdiff
2009-01-07
jprocter
refactor
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commitdiff
2009-01-07
jprocter
added higher level method to enable the display of...
tree
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commitdiff
2008-12-19
jprocter
experimental: sort by feature UI in feature settings...
tree
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commitdiff
2008-12-19
jprocter
new sort by length method, justify edit menu entries...
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commitdiff
2008-12-19
jprocter
catch null pointer exception when no colourscheme is...
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commitdiff
2008-12-15
jprocter
warning for failed parsing of newick strings
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commitdiff
2008-12-15
jprocter
new callback handler allowing threads that request...
tree
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commitdiff
2008-12-08
jprocter
display feature score in tooltip
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commitdiff
2008-12-08
jprocter
experimental buttons for sort on score/density and...
tree
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commitdiff
2008-12-05
jprocter
support for multiple accession retrieval from a databas...
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commitdiff
2008-12-04
jprocter
fetch database references for all EBI db + selected...
tree
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commitdiff
2008-12-04
jprocter
das source browser uses local source method from jalvie...
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commitdiff
2008-11-12
jprocter
selection sending and receiving, autoscrolling to highl...
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commitdiff
2008-11-12
jprocter
selection sending and receiving, autoscrolling to highl...
tree
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commitdiff
2008-11-12
jprocter
selection sending
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commitdiff
2008-11-12
jprocter
new ID constructor and selection sending
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commitdiff
2008-11-12
jprocter
new constructors for setting IDs
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commitdiff
2008-11-12
jprocter
new window discovery and alignment view navigation...
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commitdiff
2008-11-12
jprocter
jar inputstream provider enabling multiple jar entries...
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commitdiff
2008-09-09
jprocter
show non-positional features with same code as positona...
tree
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commitdiff
2008-09-09
jprocter
refactored feature tooltip generation code to static...
tree
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commitdiff
2008-09-09
jprocter
non-positional features are displayed with additional...
tree
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commitdiff
2008-09-09
jprocter
make URL links from description string when link is...
tree
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commitdiff
2008-09-08
jprocter
view settings in view submenu and user preferences...
tree
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commitdiff
2008-09-08
jprocter
introduced and commented out code for generating URLs...
tree
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commitdiff
2008-09-04
jprocter
merge from 2_4_Release branch
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commitdiff
2008-08-26
jprocter
set title of viewer frame after file has been loaded...
tree
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commitdiff
2008-08-26
jprocter
future bug fix todo
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commitdiff
2008-08-26
jprocter
new thread for initting of DBRefFetcher with latest...
tree
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commitdiff
2008-08-26
jprocter
added singleton access method to retrieve the latest...
tree
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commitdiff
2008-08-26
jprocter
tooltip for fetch db refs and more generic regex for...
tree
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commitdiff
2008-08-20
jprocter
tooltip displays formatted annotation row description...
tree
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commitdiff
2008-08-19
jprocter
beginning of fix for embl/cds/highlighting IO in https...
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commitdiff
2008-08-19
jprocter
fix for arrayoutofbounds bug when secondary structure...
tree
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commitdiff
2008-08-19
jprocter
regex links for launching URL from single click on...
tree
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commitdiff
2008-08-15
jprocter
update text and version checker
tree
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commitdiff
2008-08-15
jprocter
dialog size on macs
tree
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commitdiff
2008-08-15
jprocter
check for crossreferences every time the menus are...
tree
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commitdiff
2008-08-15
jprocter
catch invalid URL link exception properly
tree
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commitdiff
2008-08-15
jprocter
increase height of dialog
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commitdiff
2008-08-15
jprocter
allow '|' in regex for URL links to be recovered from...
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commitdiff
2008-08-13
jprocter
check for null viewport on dataset recovery
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commitdiff
2008-08-13
jprocter
ensure input data can be recovered for tree and PCA...
tree
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commitdiff
2008-08-13
jprocter
do not try to cancel jobs that cannot be cancelled
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commitdiff
2008-08-11
jprocter
regular expression based URL link generation
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commitdiff
2008-08-06
jprocter
generation of additional URLs for DBRefs on a sequence...
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commitdiff
2008-08-05
jprocter
new vamsas session does not open a dialog box
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commitdiff
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