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JAL-1087 skip processing any of the other command line arguments if no alignment...
[jalview.git]
/
src
/
jalview
/
gui
/
2012-08-24
jprocter
JAL-1143 - ensure we revalidate annotation panel height...
tree
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commitdiff
2012-08-07
jprocter
Debug message associated with TODO for JAL-1136 - re...
tree
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commitdiff
2012-08-07
jprocter
JAL-975 JAL-1137 debug messages for web service client...
tree
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commitdiff
2012-08-03
jprocter
JAL-1136 Ensure asynchronously calculated autoannotatio...
tree
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commitdiff
2012-08-03
jprocter
JAL-1136 JAL-811 JAL-812 store/recover autocalc alignme...
tree
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commitdiff
2012-08-03
jprocter
JAL-1136 fix logic for recovering AACons params
tree
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commitdiff
2012-08-03
jprocter
JAL-1136 store ws-parameter list as XML element content...
tree
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commitdiff
2012-08-03
jprocter
JAL-1115 reference to List<SequenceI> passed in 'alignm...
tree
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commitdiff
2012-08-01
jprocter
JAL-976 ensure protein disorder services appears in...
tree
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commitdiff
2012-07-08
jprocter
a209409239 (JAL-976 - add support for storing service...
tree
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commitdiff
2012-07-08
jprocter
JAL-976 - storing service parameters on the view model
tree
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commitdiff
2012-07-06
jprocter
JAL-976 test if the sliders have been modified from...
tree
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commitdiff
2012-07-06
jprocter
tidy imports
tree
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commitdiff
2012-07-03
jprocter
JAL-974 - broken copy of feature settings
tree
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commitdiff
2012-07-02
jprocter
JAL-1129 progress bar - this patch doesn't provide...
tree
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commitdiff
2012-07-02
jprocter
JAL-968 incremental - PNG/EPS output has annotation...
tree
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commitdiff
2012-07-02
jprocter
tidy imports
tree
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commitdiff
2012-07-02
jprocter
JAL-974 - use refactored methods on AlignmentPanel
tree
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commitdiff
2012-07-02
jprocter
JAL-974 - refactor FeatureRenderer constructor to Align...
tree
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commitdiff
2012-07-01
jprocter
JAL-1117 alleviate lock starvation
tree
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commitdiff
2012-07-01
jprocter
ensure all annotation dependent rendering gets refreshed
tree
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commitdiff
2012-06-19
jprocter
JAL-975 - bespoke AACons settings object to save curren...
tree
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commitdiff
2012-06-19
jprocter
patch for JAL-1172 ensure option's default value is...
tree
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commitdiff
2012-06-15
jprocter
formatting
tree
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commitdiff
2012-06-15
jprocter
JAL-1125 option to switch between Jalview and SeqSpace...
tree
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commitdiff
2012-06-15
jprocter
JAL-535 refactored core code from PCA viewer to viewmodel.
tree
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commitdiff
2012-06-15
jprocter
JAL-1120 patch for desktop
tree
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commitdiff
2012-06-15
jprocter
patch for JAL-1121 - reset button and slightly wider...
tree
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commitdiff
2012-06-15
jprocter
JAL-535 refactoring todo
tree
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commitdiff
2012-06-15
jprocter
Extended IProgressIndicator with method to check if...
tree
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commitdiff
2012-06-15
jprocter
Merge branch 'JAL-1013_pca_rna_dna' into develop
tree
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commitdiff
2012-06-14
jprocter
JAL-1118 - hack to try and get rid of flicker. consider...
tree
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commitdiff
2012-06-14
jprocter
JAL-1118 WIP - flag to mark if image buffer has just...
tree
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commitdiff
2012-06-13
jprocter
JAL-1115 refactor base collection for Alignment from...
tree
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commitdiff
2012-06-13
jprocter
javatidy
tree
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commitdiff
2012-06-12
jprocter
JAL-1115 refactor reordering code operating directly...
tree
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commitdiff
2012-06-12
jprocter
JAL-1115 refactor base collection for Alignment from...
tree
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commitdiff
2012-06-07
jprocter
javatidy
tree
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commitdiff
2012-06-07
jprocter
JAL-967, JAL-1114, JAL-1115 - modified render and calcu...
tree
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commitdiff
2012-05-30
jprocter
JAL-969 - refactor colourscheme machinery from GUI...
tree
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commitdiff
2012-05-30
jprocter
updated schema to store and recover belowAlignment...
tree
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commitdiff
2012-05-30
jprocter
JAL-1114 - refactor methods handling Vectors and Hashta...
tree
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commitdiff
2012-05-24
jprocter
TODO: JAL-1108
tree
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commitdiff
2012-05-24
jprocter
JAL-1078 - removed 'Load Score File' menu item and...
tree
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commitdiff
2012-05-24
jprocter
todo: JAL-1105
tree
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commitdiff
2012-05-24
jprocter
todo: JAL-1108
tree
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commitdiff
2012-05-23
jprocter
JAL-1067 report any warning messages to user
tree
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commitdiff
2012-05-23
jprocter
JAL-1067, JAL-1105 - refactor parser to fit Jalview...
tree
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commitdiff
2012-05-22
jprocter
Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...
tree
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commitdiff
2012-05-16
jprocter
warning dialog - fixes JAL-1099
tree
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commitdiff
2012-05-14
jprocter
pack before displaying splashscreen to ensure its prefe...
tree
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commitdiff
2012-05-14
jprocter
formatting
tree
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commitdiff
2012-05-14
jprocter
JAL-1097 - ensure replace comma for semicolon always...
tree
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commitdiff
2012-05-14
jprocter
JAL-1075
tree
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commitdiff
2012-05-14
jprocter
JAL-1061,JAL-1075 - first pass at implementing sequence...
tree
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commitdiff
2012-05-14
jprocter
clean up old commented code
tree
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commitdiff
2012-05-10
jprocter
JAL-1075 better layout and info box for source browser
tree
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commitdiff
2012-05-01
jprocter
JAL-1075 tweak layout and test display for tree based...
tree
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commitdiff
2012-04-24
jprocter
JAL-1075, JAL-1061, JAL-1064 - introduced second tier...
tree
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commitdiff
2012-04-20
jprocter
JAL-1064 JAL-671 - add tree based database dialog as...
tree
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commitdiff
2012-04-20
jprocter
JAL-1064 - hack to create menu item label for each...
tree
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commitdiff
2012-04-11
jprocter
dialog for browsing and selecting datasources hierarchi...
tree
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commitdiff
2012-03-30
jprocter
(JAL-972) format tweak for source information box
tree
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commitdiff
2012-03-30
jprocter
Merge branch 'JAL-972-dasobert-to-jdas' into JAL-972...
tree
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commitdiff
2012-03-28
jprocter
JAL-1060 - prototype GUI with traffic light coding...
tree
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commitdiff
2012-03-27
jprocter
formatting
tree
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commitdiff
2012-03-27
jprocter
JAL-976 - tweak web services gui so empty menus don...
tree
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commitdiff
2012-03-05
jprocter
(JAL-942) comment out non-functional buttons in VARNA
tree
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commitdiff
2012-03-05
jprocter
(JAL-942) clearer view structure menu entry
tree
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commitdiff
2012-03-05
jprocter
JAL-942 - sensible name on window
tree
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commitdiff
2012-03-05
jprocter
JAL-942 - make sure rna structures get a sensible name
tree
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commitdiff
2012-03-02
jprocter
formatting
tree
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commitdiff
2012-03-02
jprocter
(JAL-942) more tweaking mapping between 2-struct and...
tree
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commitdiff
2012-03-02
jprocter
(JAL-842) debug mouseover for sequences that don't...
tree
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commitdiff
2012-03-02
jprocter
remove unnecessary method
tree
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commitdiff
2012-03-01
jprocter
(JAL-842) ensure deletions are accounted for when highl...
tree
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commitdiff
2012-03-01
jprocter
(JAL-893) update to VARNAv3.9-dev version
tree
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commitdiff
2012-03-01
jprocter
Merge branch 'Release_2_7_Branch' into develop
tree
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commitdiff
2012-03-01
jprocter
debug local source management buttons and formatting
tree
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commitdiff
2012-02-29
jprocter
tidy imports and switch over to use das source registry API
tree
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commitdiff
2012-02-29
jprocter
tidy imports
tree
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commitdiff
2012-02-29
jprocter
fallout from refactoring registry datamodel to a source...
tree
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commitdiff
2012-02-29
jprocter
(JAL-972) replaced biodas with jdas sources datastructu...
tree
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commitdiff
2012-02-13
jprocter
(JAL-972) jdas source retrieval and use of jdas structu...
tree
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commitdiff
2012-02-13
jprocter
change over source attribute datamodel
tree
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commitdiff
2012-02-13
jprocter
removed all dasobert code and begun to replace with...
tree
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commitdiff
2012-02-12
Jim Procter
(JAL-1022) reverted to original strategy of escaping...
tree
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commitdiff
2012-02-12
Jim Procter
(JAL-1050) ensure all filenames passed in to the load...
tree
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commitdiff
2012-02-12
Jim Procter
(JAL-1025 JAL-1022) File based equivalence used to...
tree
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commitdiff
2012-02-12
Jim Procter
(JAL-1049) only store state reference for sequence...
tree
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commitdiff
2012-02-12
Jim Procter
JAL-1025 JAL-1022 use File based equivalence to map...
tree
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commitdiff
2012-02-12
Jim Procter
JAL-715 - remove platform dependent includes
tree
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commitdiff
2011-12-14
jprocter
JAL-1033, JAL-1013 - ensure pca window shown only after...
tree
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commitdiff
2011-12-14
jprocter
JAL-1013 - rename nucleotide and ensure current calcula...
tree
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commitdiff
2011-12-13
jprocter
JAL-1013 - toy menu to switch between nucleotide and...
tree
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commitdiff
2011-12-08
jprocter
(JAL-1013) specify sequence type to ensure PCA calculat...
tree
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commitdiff
2011-12-08
jprocter
(JAL-1023) ensure filename is properly escaped before...
tree
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commitdiff
2011-12-08
jprocter
remove commented lines
tree
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commitdiff
2011-11-21
jprocter
Merge branch 'JAL-368_dragabovedesktop' into develop
tree
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commitdiff
2011-11-21
jprocter
(JAL-368) ensure window never gets a negative Y coordin...
tree
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commitdiff
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