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ensure lastSeq is refreshed if new feature added
[jalview.git]
/
src
/
jalview
/
gui
/
2006-11-07
amwaterhouse
Tidy up group size after alignmentChanged
tree
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commitdiff
2006-11-07
amwaterhouse
Add keylistener to InternalFrame, not canvas
tree
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commitdiff
2006-11-06
amwaterhouse
Only recalc consensus for start to end of group
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commitdiff
2006-11-06
amwaterhouse
dont limit menu size
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commitdiff
2006-11-06
amwaterhouse
accelerators, save menu item
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commitdiff
2006-11-03
amwaterhouse
Alignpanel is not new if copied from j2xml
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commitdiff
2006-11-03
amwaterhouse
Remove unnecessary refresh
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commitdiff
2006-11-03
amwaterhouse
Use Jalview2XML to copy AlignmentPanel
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commitdiff
2006-11-02
amwaterhouse
return if image is null
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commitdiff
2006-11-02
amwaterhouse
Update editMenuBar after alignment changed
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commitdiff
2006-11-02
amwaterhouse
Set menu state in alignFrame
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commitdiff
2006-11-02
amwaterhouse
Fire align change for case change
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commitdiff
2006-11-02
amwaterhouse
History is per viewport
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commitdiff
2006-11-02
amwaterhouse
selected states set in updateMenusFromViewport
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commitdiff
2006-10-30
amwaterhouse
Fix for feature name amended
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commitdiff
2006-10-30
amwaterhouse
Update features
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commitdiff
2006-10-30
amwaterhouse
conservation lock
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commitdiff
2006-10-27
amwaterhouse
Remove consensus annotation if out of memory
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commitdiff
2006-10-27
amwaterhouse
updatingConsensus, updatingConservation is static ...
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commitdiff
2006-10-27
amwaterhouse
PaintRefresher can calculate seqs added or removed
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commitdiff
2006-10-27
amwaterhouse
Dont remove or add PaintRefresher registrations for...
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commitdiff
2006-10-27
amwaterhouse
-1 error
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commitdiff
2006-10-27
amwaterhouse
Reset colour schemes and alignmentChanged moved to...
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commitdiff
2006-10-26
amwaterhouse
Only adds history item if size>0
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commitdiff
2006-10-26
amwaterhouse
void changeCase(ActionEvent e
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commitdiff
2006-10-26
amwaterhouse
set quality to null if removed
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commitdiff
2006-10-26
amwaterhouse
showConservation, quality, identity not used
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commitdiff
2006-10-26
amwaterhouse
Dont readd the undo
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commitdiff
2006-10-26
amwaterhouse
sequence may be null if hidden or deleted
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commitdiff
2006-10-26
amwaterhouse
Set alignFrame of gathered panels to be the source...
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commitdiff
2006-10-26
amwaterhouse
remove gaps size range
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commitdiff
2006-10-26
amwaterhouse
Dont scroll off width-1
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commitdiff
2006-10-25
amwaterhouse
Return if negative width, ie alignment deleted
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commitdiff
2006-10-25
amwaterhouse
Get sequence in routine
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commitdiff
2006-10-25
amwaterhouse
viewport.hasHiddenColumns updated after undo/redo performed
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commitdiff
2006-10-25
amwaterhouse
EditCommand added to AlignFrame
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commitdiff
2006-10-24
amwaterhouse
Must set alignIndex before delete takes place
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commitdiff
2006-10-24
amwaterhouse
Use EditCommand.Cut
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commitdiff
2006-10-24
amwaterhouse
HistoryItem replaced by CommandI
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commitdiff
2006-10-24
amwaterhouse
EditCommand implemented
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commitdiff
2006-10-24
amwaterhouse
must translate graphics back the same amountcvs diff...
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commitdiff
2006-10-24
amwaterhouse
Change Case is undoable
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commitdiff
2006-10-24
amwaterhouse
SequenceIndex might be beyond old height
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commitdiff
2006-10-24
amwaterhouse
Must catch image outOfMemoryError
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commitdiff
2006-10-18
amwaterhouse
showqual, showcons never used
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commitdiff
2006-10-18
amwaterhouse
remove html and body from tooltip
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commitdiff
2006-10-18
amwaterhouse
new feature args
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commitdiff
2006-10-18
amwaterhouse
Can set description for new features
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commitdiff
2006-10-18
amwaterhouse
Faded anntotations when recalculating
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commitdiff
2006-10-18
amwaterhouse
set conserve and quality null if outofmemory
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commitdiff
2006-10-18
amwaterhouse
No longer a FeatureListener
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commitdiff
2006-10-12
amwaterhouse
showQuality may be updated during archive file load
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commitdiff
2006-10-12
amwaterhouse
Add features from Popupmenu
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commitdiff
2006-10-12
amwaterhouse
Use i, not index if not representedSeqs
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commitdiff
2006-10-12
amwaterhouse
If conservation is null, disable Blosum62 and conservat...
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commitdiff
2006-10-12
amwaterhouse
Annotasiont[j] might be null
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commitdiff
2006-10-12
amwaterhouse
Local adjustForhiddenSeqs routine
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commitdiff
2006-10-12
amwaterhouse
RepresentGroup count items
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commitdiff
2006-10-10
amwaterhouse
No need to find index when deleting
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commitdiff
2006-10-10
amwaterhouse
Calculate alWidth earlier
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commitdiff
2006-10-10
amwaterhouse
Must repaint whole alignPanel
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commitdiff
2006-10-10
amwaterhouse
Only getGroups once if groupEditingcvs update
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commitdiff
2006-10-10
amwaterhouse
aaIndex replaces aaHash
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commitdiff
2006-10-10
amwaterhouse
Consensus and conservation updated in threads
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commitdiff
2006-10-09
jprocter
imported Vamsas bindings and alpha vamsas client code...
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commitdiff
2006-10-09
jprocter
set firstColumn property for an alignmentView object.
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commitdiff
2006-10-06
jprocter
Added filter so that input to a JPred job is *solely...
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commitdiff
2006-10-06
amwaterhouse
AAFrequency optimized
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commitdiff
2006-10-05
amwaterhouse
Multiple Views
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commitdiff
2006-10-03
amwaterhouse
Check annotation is editable
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commitdiff
2006-09-27
jprocter
fixed tree building exception when one residue or a...
tree
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commitdiff
2006-09-18
amwaterhouse
Draw hidden column marker correctly
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commitdiff
2006-09-18
amwaterhouse
click node to select sequences
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commitdiff
2006-09-12
amwaterhouse
hideSequence hide all before recalc consensus
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commitdiff
2006-09-12
amwaterhouse
Allow alt for group editing
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commitdiff
2006-09-11
amwaterhouse
Comment out lower case colouring for bug fix release
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commitdiff
2006-09-11
amwaterhouse
Remove system.outs
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commitdiff
2006-09-11
amwaterhouse
get idWidth should use italic font when getting size
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commitdiff
2006-09-11
amwaterhouse
visWidth allows borders to be drawn around offscreen...
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commitdiff
2006-09-11
amwaterhouse
Remove system.out
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commitdiff
2006-09-11
amwaterhouse
getVisibleIdWidth() for making images
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commitdiff
2006-09-07
jprocter
added copy consensus sequence to consensus annotation...
tree
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commitdiff
2006-09-01
amwaterhouse
Feature Settings
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commitdiff
2006-08-30
amwaterhouse
GraphHeight might be zero
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commitdiff
2006-08-30
amwaterhouse
User colours are case sensitive
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commitdiff
2006-08-29
amwaterhouse
Can shrink graph to zero
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commitdiff
2006-08-29
amwaterhouse
createMapping alreadyMapped
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commitdiff
2006-08-29
amwaterhouse
Additional repaint
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commitdiff
2006-08-29
amwaterhouse
jnetfile can be loaded onto alignment
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commitdiff
2006-08-22
amwaterhouse
To uppercase only visible
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commitdiff
2006-08-22
amwaterhouse
Remove group when hiding cols from scalePanel
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commitdiff
2006-08-22
jprocter
off by one bug in hiden column unmarshalling
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commitdiff
2006-08-21
amwaterhouse
header updated
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commitdiff
2006-08-21
amwaterhouse
validate groupPanel
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commitdiff
2006-08-21
amwaterhouse
validate groupPanel
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commitdiff
2006-08-21
amwaterhouse
Add uniprot DBref
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commitdiff
2006-08-21
jprocter
Refactored Jnet and added hidden columns support.
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commitdiff
2006-08-18
amwaterhouse
Check colourScheme is not null - jalview prior 2.5...
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commitdiff
2006-08-18
amwaterhouse
Only discover DAS sources if panel shown
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commitdiff
2006-08-18
amwaterhouse
only set new layout if 2 buttons visible
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commitdiff
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